C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CLOCK interacting protein, circadian
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034157 Cipc 10090 + 12:86947043-86965362 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000038369 Cipc-201 86947343-86965362 protein_coding
  ENSMUST00000185434 Cipc-002 86947043-86963807 nonsense_mediated_decay
  ENSMUST00000185783 Cipc-005 86947454-86960390 nonsense_mediated_decay
  ENSMUST00000186499 Cipc-010 86947466-86960307 protein_coding
  ENSMUST00000187814 Cipc-001 86947343-86965362 protein_coding
  ENSMUST00000188046 Cipc-006 86947418-86960391 nonsense_mediated_decay
  ENSMUST00000188901 Cipc-008 86947396-86953165 retained_intron
  ENSMUST00000189246 Cipc-004 86947043-86962158 protein_coding
  ENSMUST00000190588 Cipc-007 86947490-86961883 nonsense_mediated_decay
  ENSMUST00000191032 Cipc-003 86947099-86961967 nonsense_mediated_decay
  ENSMUST00000191463 Cipc-009 86952657-86962833 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038369ENSMUST00000185434ENSMUST00000191463
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038369 4.557±1.30 5.235±1.87 21.517±0.08 14.208±6.24 5.468±0.97 13.394±2.77 4.778±0.90 6.236±2.02 4.261±1.53 6.722±2.91 9.502±1.13 6.936±3.06 2.223±1.27 12.055±1.49
ENSMUST00000185434 2.314±0.41 N/A N/A N/A 2.659±1.29 N/A N/A N/A N/A 2.302±0.00 N/A N/A 1.396±0.00 N/A
ENSMUST00000191463 4.130±0.87 16.157±1.56 N/A N/A 6.752±0.73 22.674±2.71 4.519±0.00 4.564±1.30 5.843±1.13 5.328±1.77 N/A 12.033±3.33 1.688±0.02 7.864±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VF CIL_0007VF_0002 VISTA 12:86500572-87103602
CIL_0008WP CIL_0008WP_0002 VISTA 12:86510598-87113301
CIL_000867 CIL_000867_0002 VISTA 12:86515545-87117582
CIL_0007VT CIL_0007VT_0002 VISTA 12:86594665-87199694
CIL_0003P0 CIL_0003P0_0002 CGP 12:86880703-86965362
CIL_00071S CIL_00071S_0002 CGP 12:86947043-86988676

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0042754 IMP negative regulation of circadian rhythm
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0048511 IEA rhythmic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075397 si:dkey-204k5.2 si:dkey-204k5.2 protein_coding Danio_rerio
ENSDARG00000078095 si:ch73-387e10.3 si:ch73-387e10.3 protein_coding Danio_rerio
ENSG00000198894 CIPC CLOCK-interacting pacemaker protein_coding Homo_sapiens

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