C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CLOCK-interacting pacemaker
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361786 CIPC-001 ENSG00000198894 9606 + 14:77098097-77117287 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361786
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361786 6.245±0.00 1.574±0.00 11.487±2.01 3.712±1.79 6.164±0.00 8.219±2.75 3.291±0.00 2.519±0.52 4.013±1.18 13.580±7.02 3.572±1.96 2.065±1.06 6.444±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VF CIL_0007VF_0001 VISTA 14:76618298-77221354
CIL_0008WP CIL_0008WP_0001 VISTA 14:76629854-77233554
CIL_000867 CIL_000867_0001 VISTA 14:76636452-77239164
CIL_0007VT CIL_0007VT_0001 VISTA 14:76740528-77345010
CIL_0003P0 CIL_0003P0_0001 CGP 14:77024543-77117287

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0042754 ISS negative regulation of circadian rhythm
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0048511 IEA rhythmic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038369 Cipc-201 protein_coding Mus_musculus 0 1432
ENSMUST00000187814 Cipc-001 protein_coding Mus_musculus 0 1432
ENSMUST00000191463 Cipc-009 protein_coding Mus_musculus 0 1254
ENSMUST00000189246 Cipc-004 protein_coding Mus_musculus 0 1221
ENSMUST00000185434 Cipc-002 nonsense_mediated_decay Mus_musculus 0 1205
ENSMUST00000191032 Cipc-003 nonsense_mediated_decay Mus_musculus 0 429
ENSMUST00000190588 Cipc-007 nonsense_mediated_decay Mus_musculus 0 324

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