C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinoid X receptor, beta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000204231 RXRB 9606 - 6:33193588-33200688 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000374680 RXRB-001 33193588-33200688 protein_coding
  ENST00000374685 RXRB-002 33193588-33200614 protein_coding
  ENST00000481441 RXRB-003 33195785-33198635 retained_intron
  ENST00000483281 RXRB-004 33194220-33200637 nonsense_mediated_decay
  ENST00000483821 RXRB-006 33194664-33195360 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000374680ENST00000374685
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000374680 N/A 1.588±0.00 N/A N/A N/A N/A 2.086±0.00 N/A N/A N/A N/A
ENST00000374685 10.223±0.00 11.025±0.00 9.612±0.00 10.723±0.00 9.151±0.00 7.855±5.46 N/A 11.619±0.00 15.719±0.00 12.752±2.66 13.270±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001PH CIL_0001PH_0002 CGP 6:33162681-33200688

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001228 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001701 IEA in utero embryonic development
GO:0001893 IEA maternal placenta development
GO:0003700 NAS:IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0003713 TAS transcription coactivator activity
GO:0004879 IDA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0004886 IEA 9-cis retinoic acid receptor activity
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0042803 IEA protein homodimerization activity
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048384 IEA retinoic acid receptor signaling pathway
GO:0055012 IEA ventricular cardiac muscle cell differentiation
GO:0060038 IEA cardiac muscle cell proliferation
GO:0071300 IEA cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002006 rxrbb retinoid x receptor, beta b protein_coding Danio_rerio
ENSDARG00000078954 rxrba retinoid x receptor, beta a protein_coding Danio_rerio
ENSMUSG00000039656 Rxrb retinoid X receptor beta protein_coding Mus_musculus

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