C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinoid x receptor, beta a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000078954 rxrba 7955 - 19:7871577-7897380 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000009755 rxrba-201 7871577-7895541 protein_coding
  ENSDART00000102075 rxrba-004 7871646-7895457 protein_coding
  ENSDART00000112245 rxrba-202 7871577-7895541 protein_coding
  ENSDART00000130234 rxrba-006 7890501-7895457 protein_coding
  ENSDART00000131527 rxrba-002 7880875-7883455 retained_intron
  ENSDART00000132887 rxrba-005 7883027-7895457 protein_coding
  ENSDART00000136528 rxrba-003 7871577-7895593 protein_coding
  ENSDART00000147429 rxrba-007 7887912-7897380 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLiverENSDART00000102075ENSDART00000136528
Transcript ID Heart Kidney Liver
ENSDART00000102075 1.642±0.00 27.052±0.00 1.983±0.00
ENSDART00000136528 N/A N/A 0.939±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001PH CIL_0001PH_0001 CGP 19:7802938-7897380

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000981 IDA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0008270 IEA zinc ion binding
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-dependent
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000204231 RXRB retinoid X receptor, beta protein_coding Homo_sapiens
ENSMUSG00000039656 Rxrb retinoid X receptor beta protein_coding Mus_musculus

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