C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001PH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000012422-ENSDARG00000078954 CGP 7955 19:7802938-7897380
GeneTranscriptPositionBiotype
ENSDARG00000012422 (col11a2)
collagen type XI alpha-2 		ENSDART00000033363 (col11a2-001) 7803456-7847726 protein_coding
ENSDART00000104799 (col11a2-201) 7802938-7847643 protein_coding
ENSDART00000105754 (col11a2-202) 7802941-7847337 protein_coding
ENSDART00000128331 (col11a2-003) 7828432-7847742 protein_coding
ENSDART00000133179 (col11a2-002) 7803824-7847596 protein_coding
ENSDART00000151138 (col11a2-004) 7802938-7847643 protein_coding
CIL_0001PH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000204248-ENSG00000204231 CGP 9606 6:33162681-33200688
GeneTranscriptPositionBiotype
ENSG00000112473 (SLC39A7)
solute carrier family 39 (zinc transporter), member 7 		ENST00000374675 (SLC39A7-002) 33200826-33204439 protein_coding
ENST00000374677 (SLC39A7-001) 33200873-33204439 protein_coding
ENST00000444757 (SLC39A7-003) 33200445-33202692 protein_coding
ENST00000463972 (SLC39A7-005) 33202255-33204439 processed_transcript
ENST00000617885 (SLC39A7-201) 33200961-33204436 protein_coding
ENSG00000202441 (RNY4P10)
RNA, Ro-associated Y4 pseudogene 10 		ENST00000365571 (RNY4P10-201) 33199601-33199696 misc_RNA
ENSG00000204231 (RXRB)
retinoid X receptor, beta 		ENST00000374680 (RXRB-001) 33193588-33200688 protein_coding
ENST00000374685 (RXRB-002) 33193588-33200614 protein_coding
ENST00000481441 (RXRB-003) 33195785-33198635 retained_intron
ENST00000483281 (RXRB-004) 33194220-33200637 nonsense_mediated_decay
ENST00000483821 (RXRB-006) 33194664-33195360 retained_intron
ENSG00000204248 (COL11A2)
collagen, type XI, alpha 2 		ENST00000341947 (COL11A2-201) 33162692-33192468 protein_coding
ENST00000361917 (COL11A2-202) 33162692-33192468 protein_coding
ENST00000374708 (COL11A2-001) 33162681-33192499 protein_coding
ENST00000395194 (COL11A2-003) 33186445-33192454 protein_coding
ENST00000457788 (COL11A2-002) 33178132-33192467 protein_coding
ENST00000477772 (COL11A2-004) 33162695-33177893 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001PH_0001ENSDARG00000012422ENSDART00000033363ENSDART00000104799ENSDART00000105754ENSDART00000128331ENSDART00000133179ENSDART00000151138CIL_0001PH_0002ENSG00000112473ENST00000374675ENST00000374677ENST00000444757ENST00000463972ENST00000617885ENSG00000202441ENST00000365571ENSG00000204231ENST00000374680ENST00000374685ENST00000481441ENST00000483281ENST00000483821ENSG00000204248ENST00000341947ENST00000361917ENST00000374708ENST00000395194ENST00000457788ENST00000477772
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001PH_0001ENSDARG00000012422ENSDART00000033363ENSDART00000128331ENSDART00000133179ENSDART00000151138CIL_0001PH_0002ENSG00000112473ENST00000374675ENST00000374677ENST00000444757ENST00000463972ENST00000617885ENSG00000202441ENST00000365571ENSG00000204231ENST00000374680ENST00000374685ENSG00000204248ENST00000341947ENST00000361917ENST00000374708ENST00000395194ENST00000457788ENST00000477772
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000012422 ENSDART00000033363 N/A N/A N/A N/A N/A N/A 0.052±0.00 N/A N/A N/A 0.033±0.00 N/A N/A N/A
ENSDART00000104799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000105754 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000128331 N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A N/A N/A N/A N/A
ENSDART00000133179 N/A N/A N/A N/A N/A N/A 0.049±0.00 N/A 0.019±0.00 N/A N/A N/A N/A N/A
ENSDART00000151138 N/A N/A N/A 0.098±0.05 N/A N/A 0.159±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000112473 ENST00000374675 16.157±0.00 12.188±0.00 4.951±0.00 6.689±4.23 15.713±9.24 12.407±2.24 4.693±3.32 19.094±13.07 17.740±9.83 17.461±12.32 4.435±1.93 9.418±3.61 42.420±7.57 12.416±0.00
ENST00000374677 26.092±0.00 20.131±0.00 3.123±0.00 7.321±5.22 13.135±6.24 10.417±2.47 6.876±4.76 16.441±13.50 7.841±5.68 8.481±2.86 N/A 19.923±10.30 23.572±4.27 17.630±0.00
ENST00000444757 N/A N/A 5.822±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 43.307±0.00 N/A
ENST00000463972 16.871±0.00 22.924±0.00 N/A 13.128±0.00 17.021±0.00 14.710±0.00 N/A 27.444±0.00 28.538±0.00 15.225±0.00 9.969±0.00 31.330±11.50 42.349±0.00 16.790±3.30
ENST00000617885 N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.842±0.00 N/A 24.840±6.44 49.963±7.78 16.874±0.00
ENSG00000202441 ENST00000365571 0.624±0.00 1.197±0.00 N/A 0.394±0.00 0.744±0.00 0.178±0.00 0.193±0.00 N/A N/A N/A N/A 0.969±0.00 N/A N/A
ENSG00000204231 ENST00000374680 N/A N/A N/A 1.588±0.00 N/A N/A N/A N/A 2.086±0.00 N/A N/A N/A N/A N/A
ENST00000374685 10.223±0.00 N/A N/A 11.025±0.00 9.612±0.00 10.723±0.00 9.151±0.00 7.855±5.46 N/A 11.619±0.00 15.719±0.00 12.752±2.66 N/A 13.270±0.00
ENST00000481441 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483281 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483821 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000204248 ENST00000341947 N/A N/A N/A N/A N/A N/A N/A N/A 0.128±0.00 0.367±0.00 N/A 0.403±0.00 N/A N/A
ENST00000361917 N/A 0.162±0.00 N/A N/A 0.043±0.00 N/A 0.093±0.08 0.072±0.00 0.029±0.00 0.383±0.00 N/A 0.156±0.02 0.040±0.01 0.447±0.00
ENST00000374708 N/A N/A N/A 0.194±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000395194 N/A N/A N/A N/A 0.104±0.00 0.034±0.00 N/A N/A N/A N/A 0.077±0.00 0.351±0.00 0.029±0.00 0.468±0.00
ENST00000457788 N/A N/A N/A 0.205±0.00 0.213±0.00 0.029±0.00 N/A 0.221±0.00 N/A N/A N/A N/A N/A N/A
ENST00000477772 N/A N/A N/A N/A N/A 0.033±0.00 0.018±0.00 0.069±0.00 0.058±0.00 N/A 0.030±0.00 0.199±0.00 0.030±0.01 0.285±0.00

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