C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pre-B-cell leukemia homeobox 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000204304 PBX2 9606 - 6:32184741-32190186 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000375050 PBX2-001 32184741-32190186 protein_coding
  ENST00000478678 PBX2-002 32186973-32189942 retained_intron
  ENST00000480254 PBX2-003 32188280-32189077 retained_intron
  ENST00000495300 PBX2-005 32186256-32187515 retained_intron
  ENST00000496171 PBX2-004 32187233-32188816 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000375050ENST00000478678ENST00000496171
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000375050 13.812±0.00 27.382±0.00 6.265±0.00 9.333±0.00 16.049±0.00 5.400±0.00 8.054±6.95 4.372±3.43 19.109±18.49 12.484±0.00 22.991±14.43 29.534±3.24 16.672±5.18
ENST00000478678 N/A N/A N/A 2.084±0.00 N/A N/A N/A N/A N/A N/A 6.767±3.73 N/A 5.799±0.00
ENST00000496171 N/A N/A N/A 2.849±0.00 N/A N/A 1.195±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IDA:IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0008134 IPI transcription factor binding
GO:0009954 IEA proximal/distal pattern formation
GO:0030326 IEA embryonic limb morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019717 pbx2 pre-B-cell leukemia transcription factor 2 protein_coding Danio_rerio
ENSMUSG00000034673 Pbx2 pre B cell leukemia homeobox 2 protein_coding Mus_musculus

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