C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre-B-cell leukemia homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000375050 PBX2-001 ENSG00000204304 9606 - 6:32184741-32190186 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000375050
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000375050 13.812±0.00 27.382±0.00 6.265±0.00 9.333±0.00 16.049±0.00 5.400±0.00 8.054±6.95 4.372±3.43 19.109±18.49 12.484±0.00 22.991±14.43 29.534±3.24 16.672±5.18

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IDA:IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0008134 IPI transcription factor binding
GO:0009954 IEA proximal/distal pattern formation
GO:0030326 IEA embryonic limb morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038149 Pbx2-001 protein_coding Mus_musculus 0 2154
ENSMUST00000183827 Pbx2-005 protein_coding Mus_musculus 0 1507
ENSMUST00000173328 Pbx2-002 protein_coding Mus_musculus 0 1495
ENSDART00000129503 pbx1b-203 protein_coding Danio_rerio 0 671
ENSDART00000122028 pbx1b-201 protein_coding Danio_rerio 0 671
ENSDART00000125538 pbx1b-202 protein_coding Danio_rerio 0 671
ENSMUST00000174532 Pbx2-003 protein_coding Mus_musculus 0 649
ENSDART00000004751 pbx2-201 protein_coding Danio_rerio 0 488
ENSDART00000130045 pbx2-202 protein_coding Danio_rerio 0 488
ENSMUST00000081503 Pbx4-004 protein_coding Mus_musculus 0 462
ENSDART00000157364 pbx2-001 protein_coding Danio_rerio 0 311
ENSMUST00000173229 Pbx2-004 retained_intron Mus_musculus 0 285
ENSMUST00000134777 Pbx4-001 nonsense_mediated_decay Mus_musculus 2e-30 139
ENSMUST00000132899 Pbx4-003 nonsense_mediated_decay Mus_musculus 2e-30 139
ENSMUST00000131637 Pbx4-007 protein_coding Mus_musculus 6e-30 137
ENSMUST00000156319 Pbx4-002 nonsense_mediated_decay Mus_musculus 6e-30 137
ENSMUST00000151975 Pbx4-005 retained_intron Mus_musculus 6e-30 137
ENSMUST00000176790 Pbx1-004 protein_coding Mus_musculus 0.000000000000002 90
ENSMUST00000176540 Pbx1-002 protein_coding Mus_musculus 0.000000000000002 90
ENSMUST00000097471 Pbx1-009 processed_transcript Mus_musculus 0.000000000001 81

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