C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mutS homolog 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000204410 MSH5 9606 + 6:31739948-31762834 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000375703 MSH5-004 31740021-31762676 protein_coding
  ENST00000375740 MSH5-005 31740021-31762676 protein_coding
  ENST00000375750 MSH5-002 31739951-31762676 protein_coding
  ENST00000375755 MSH5-001 31739948-31762834 protein_coding
  ENST00000395853 MSH5-006 31756592-31762676 protein_coding
  ENST00000423982 MSH5-021 31740226-31762589 nonsense_mediated_decay
  ENST00000425703 MSH5-008 31739991-31744234 protein_coding
  ENST00000429846 MSH5-018 31761212-31762676 protein_coding
  ENST00000450148 MSH5-011 31743978-31759491 protein_coding
  ENST00000463094 MSH5-009 31740005-31743480 retained_intron
  ENST00000463144 MSH5-010 31741246-31762635 nonsense_mediated_decay
  ENST00000467319 MSH5-014 31758195-31759502 retained_intron
  ENST00000468136 MSH5-022 31753283-31759501 retained_intron
  ENST00000468602 MSH5-013 31751496-31759134 processed_transcript
  ENST00000482280 MSH5-019 31740005-31746331 processed_transcript
  ENST00000484309 MSH5-017 31759917-31762676 nonsense_mediated_decay
  ENST00000494458 MSH5-016 31761923-31762676 retained_intron
  ENST00000494646 MSH5-023 31759532-31760173 retained_intron
  ENST00000497269 MSH5-012 31744231-31754040 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000375703ENST00000375740ENST00000375750ENST00000375755ENST00000395853ENST00000425703ENST00000429846ENST00000463094ENST00000463144ENST00000467319ENST00000468136ENST00000482280ENST00000494458ENST00000497269
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000375703 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.588±0.00 2.744±0.00
ENST00000375740 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.124±0.00 N/A N/A N/A N/A
ENST00000375750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.630±0.00 N/A
ENST00000375755 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.027±0.00
ENST00000395853 1.302±0.00 6.255±0.00 0.789±0.00 0.557±0.00 3.557±0.00 0.741±0.08 0.633±0.00 3.356±0.00 0.725±0.07 1.224±0.98 N/A 3.591±1.56 0.697±0.27 4.030±0.66
ENST00000425703 N/A N/A N/A N/A N/A 2.269±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429846 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.980±0.00 N/A
ENST00000463094 N/A N/A N/A N/A N/A N/A N/A 1.365±0.00 1.077±0.00 N/A N/A N/A N/A N/A
ENST00000463144 N/A N/A N/A N/A N/A 0.779±0.00 N/A N/A N/A N/A N/A N/A N/A 4.228±0.00
ENST00000467319 N/A N/A N/A N/A N/A N/A 0.142±0.00 N/A N/A N/A N/A N/A N/A 7.432±0.00
ENST00000468136 N/A N/A N/A N/A N/A N/A N/A 0.992±0.00 N/A N/A N/A 12.098±0.00 3.724±0.00 15.182±0.00
ENST00000482280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.848±0.00 N/A N/A N/A
ENST00000494458 N/A N/A N/A 1.064±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497269 3.063±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000795 IBA synaptonemal complex
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0006200 IBA ATP catabolic process
GO:0006298 IEA mismatch repair
GO:0007131 IBA reciprocal meiotic recombination
GO:0008094 IBA DNA-dependent ATPase activity
GO:0030983 IBA:IEA mismatched DNA binding
GO:0045143 IBA homologous chromosome segregation
GO:0051026 IBA chiasma assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077479 MSH5 mutS homolog 5 protein_coding Danio_rerio
ENSMUSG00000007035 Msh5 mutS homolog 5 (E. coli) protein_coding Mus_musculus

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