C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mutS homolog 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395853 MSH5-006 ENSG00000204410 9606 + 6:31756592-31762676 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000395853
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000395853 1.302±0.00 6.255±0.00 0.789±0.00 0.557±0.00 3.557±0.00 0.741±0.08 0.633±0.00 3.356±0.00 0.725±0.07 1.224±0.98 3.591±1.56 0.697±0.27 4.030±0.66

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0006298 IEA mismatch repair
GO:0030983 IEA mismatched DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000097338 Msh5-008 protein_coding Mus_musculus 0 1718
ENSMUST00000007250 Msh5-001 protein_coding Mus_musculus 0 1718
ENSMUST00000174603 Msh5-007 nonsense_mediated_decay Mus_musculus 0 1653
ENSMUST00000174026 Msh5-003 nonsense_mediated_decay Mus_musculus 0 1234
ENSMUST00000172536 Msh5-005 nonsense_mediated_decay Mus_musculus 0 948

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