C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATP-binding cassette, sub-family F (GCN20), member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000204574 ABCF1 9606 + 6:30571376-30597179 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000326195 ABCF1-001 30571376-30591532 protein_coding
  ENST00000376545 ABCF1-002 30571393-30591313 protein_coding
  ENST00000441867 ABCF1-003 30571433-30583708 protein_coding
  ENST00000468958 ABCF1-006 30571442-30580448 protein_coding
  ENST00000475993 ABCF1-005 30582465-30597179 nonsense_mediated_decay
  ENST00000479542 ABCF1-007 30589429-30590743 retained_intron
  ENST00000542772 ABCF1-008 30578127-30578494 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000326195ENST00000376545ENST00000441867ENST00000468958ENST00000475993
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000326195 9.001±0.00 9.195±0.00 1.172±0.00 0.277±0.00 4.403±0.00 3.610±0.00 3.690±0.00 4.480±2.79 1.388±0.77 7.744±0.00 0.315±0.00 6.435±6.56 10.517±0.13 4.920±0.00
ENST00000376545 15.365±0.00 16.485±0.00 N/A 3.822±0.00 4.057±2.30 3.853±3.52 10.616±0.00 7.847±0.00 2.453±1.59 10.195±9.13 21.196±20.63 9.574±4.47 13.703±6.85 15.837±5.56
ENST00000441867 N/A N/A 0.957±0.00 N/A N/A N/A N/A 0.919±0.00 1.621±0.00 N/A N/A N/A N/A N/A
ENST00000468958 N/A N/A N/A 1.122±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475993 N/A 4.317±0.00 N/A 1.146±0.00 0.775±0.00 0.540±0.00 0.300±0.00 0.820±0.00 0.758±0.00 1.045±0.00 1.550±0.00 17.646±0.00 N/A 28.803±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0001 VISTA 6:30539989-31144784

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005635 IDA nuclear envelope
GO:0005654 IDA nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005840 IEA ribosome
GO:0006200 IEA ATP catabolic process
GO:0006412 TAS translation
GO:0006413 IMP translational initiation
GO:0006954 TAS inflammatory response
GO:0008135 TAS translation factor activity, nucleic acid binding
GO:0008494 IDA translation activator activity
GO:0016020 IDA membrane
GO:0016887 IEA ATPase activity
GO:0042788 IDA polysomal ribosome
GO:0043022 IDA ribosome binding
GO:0044822 IDA poly(A) RNA binding
GO:0045727 IDA positive regulation of translation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031795 abcf1 ATP-binding cassette, sub-family F (GCN20), member 1 protein_coding Danio_rerio
ENSMUSG00000038762 Abcf1 ATP-binding cassette, sub-family F (GCN20), member 1 protein_coding Mus_musculus

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