C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family F (GCN20), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000326195 ABCF1-001 ENSG00000204574 9606 + 6:30571376-30591532 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000326195
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000326195 9.001±0.00 9.195±0.00 1.172±0.00 0.277±0.00 4.403±0.00 3.610±0.00 3.690±0.00 4.480±2.79 1.388±0.77 7.744±0.00 0.315±0.00 6.435±6.56 10.517±0.13 4.920±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0001 VISTA 6:30539989-31144784

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005635 IDA nuclear envelope
GO:0005654 IDA nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005840 IEA ribosome
GO:0006200 IEA ATP catabolic process
GO:0006412 TAS translation
GO:0006413 IMP translational initiation
GO:0006954 TAS inflammatory response
GO:0008135 TAS translation factor activity, nucleic acid binding
GO:0008494 IDA translation activator activity
GO:0016020 IDA membrane
GO:0016887 IEA ATPase activity
GO:0042788 IDA polysomal ribosome
GO:0043022 IDA ribosome binding
GO:0044822 IDA poly(A) RNA binding
GO:0045727 IDA positive regulation of translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043757 Abcf1-001 protein_coding Mus_musculus 0 2737
ENSMUST00000173111 Abcf1-006 retained_intron Mus_musculus 0 636
ENSMUST00000087205 Abcf1-005 retained_intron Mus_musculus 0 379
ENSMUST00000173090 Abcf1-007 retained_intron Mus_musculus 0 259
ENSMUST00000173125 Abcf1-008 retained_intron Mus_musculus 1.00053e-42 180

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