C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family F (GCN20), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000475993 ABCF1-005 ENSG00000204574 9606 + 6:30582465-30597179 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000475993
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000475993 4.317±0.00 1.146±0.00 0.775±0.00 0.540±0.00 0.300±0.00 0.820±0.00 0.758±0.00 1.045±0.00 1.550±0.00 17.646±0.00 28.803±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0001 VISTA 6:30539989-31144784

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0016887 IEA ATPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043757 Abcf1-001 protein_coding Mus_musculus 0 2194
ENSMUST00000173111 Abcf1-006 retained_intron Mus_musculus 0 636
ENSMUST00000087205 Abcf1-005 retained_intron Mus_musculus 0 379
ENSMUST00000173090 Abcf1-007 retained_intron Mus_musculus 0 259
ENSMUST00000173125 Abcf1-008 retained_intron Mus_musculus 8.00141e-43 180

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