C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family F (GCN20), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000376545 ABCF1-002 ENSG00000204574 9606 + 6:30571393-30591313 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000376545
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000376545 15.365±0.00 16.485±0.00 3.822±0.00 4.057±2.30 3.853±3.52 10.616±0.00 7.847±0.00 2.453±1.59 10.195±9.13 21.196±20.63 9.574±4.47 13.703±6.85 15.837±5.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0001 VISTA 6:30539989-31144784

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005635 IDA nuclear envelope
GO:0005654 IDA nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0006412 TAS translation
GO:0006413 IMP translational initiation
GO:0006954 TAS inflammatory response
GO:0008135 TAS translation factor activity, nucleic acid binding
GO:0008494 IDA translation activator activity
GO:0016020 IDA membrane
GO:0016887 IEA ATPase activity
GO:0042788 IDA polysomal ribosome
GO:0043022 IDA ribosome binding
GO:0044822 IDA poly(A) RNA binding
GO:0045727 IDA positive regulation of translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043757 Abcf1-001 protein_coding Mus_musculus 0 2150
ENSMUST00000173111 Abcf1-006 retained_intron Mus_musculus 0 636
ENSMUST00000087205 Abcf1-005 retained_intron Mus_musculus 0 379
ENSMUST00000173090 Abcf1-007 retained_intron Mus_musculus 0 259
ENSMUST00000173125 Abcf1-008 retained_intron Mus_musculus 8.99634e-43 180

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