C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATP-binding cassette, sub-family F (GCN20), member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038762 Abcf1 10090 - 17:35956819-35969761 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000043757 Abcf1-001 35956819-35969761 protein_coding
  ENSMUST00000087205 Abcf1-005 35958670-35959614 retained_intron
  ENSMUST00000172661 Abcf1-003 35964254-35969761 nonsense_mediated_decay
  ENSMUST00000173090 Abcf1-007 35958071-35959466 retained_intron
  ENSMUST00000173111 Abcf1-006 35957287-35958486 retained_intron
  ENSMUST00000173125 Abcf1-008 35957301-35958188 retained_intron
  ENSMUST00000174128 Abcf1-004 35963639-35969359 protein_coding
  ENSMUST00000174834 Abcf1-002 35961701-35964272 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043757ENSMUST00000173111ENSMUST00000174128
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043757 24.470±2.00 26.274±4.32 24.997±0.42 28.892±3.39 24.348±5.47 27.641±2.09 20.586±2.71 23.595±0.99 27.821±11.92 23.425±0.67 26.427±0.94 35.922±5.90 73.064±33.42 52.851±3.75
ENSMUST00000173111 N/A 12.054±0.59 N/A N/A N/A 13.602±1.78 N/A N/A N/A N/A N/A 15.828±0.59 N/A N/A
ENSMUST00000174128 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 242.435±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0002 VISTA 17:35419853-36021785

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005524 ISS ATP binding
GO:0005635 ISS nuclear envelope
GO:0005654 ISS nucleoplasm
GO:0005737 ISS cytoplasm
GO:0005840 IEA ribosome
GO:0006200 IEA ATP catabolic process
GO:0006413 ISS translational initiation
GO:0008494 ISS translation activator activity
GO:0016020 IEA membrane
GO:0016887 IEA ATPase activity
GO:0042788 ISS polysomal ribosome
GO:0043022 ISS ribosome binding
GO:0044822 IEA poly(A) RNA binding
GO:0045727 ISS positive regulation of translation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031795 abcf1 ATP-binding cassette, sub-family F (GCN20), member 1 protein_coding Danio_rerio
ENSG00000204574 ABCF1 ATP-binding cassette, sub-family F (GCN20), member 1 protein_coding Homo_sapiens

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