C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: poly(A) binding protein, nuclear 1-like (cytoplasmic)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000205022 PABPN1L 9606 - 16:88863333-88866660 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000411789 PABPN1L-003 88863686-88866660 protein_coding
  ENST00000419291 PABPN1L-001 88863333-88866618 protein_coding
  ENST00000547152 PABPN1L-002 88863686-88866660 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainHeartLiverOvaryTestisENST00000411789ENST00000419291ENST00000547152
Transcript ID Adrenal Brain Heart Liver Ovary Testis
ENST00000411789 N/A N/A N/A N/A 0.048±0.00 N/A
ENST00000419291 0.285±0.00 0.027±0.00 0.022±0.00 N/A 0.060±0.01 0.047±0.02
ENST00000547152 N/A N/A N/A 0.070±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091T CIL_00091T_0001 VISTA 16:88690989-89294615
CIL_00032Z CIL_00032Z_0001 CGP 16:88856220-88866660
CIL_0006AK CIL_0006AK_0002 CGP 16:88863333-88977204

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005737 IEA cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000087996 pabpn1l poly(A) binding protein, nuclear 1, like protein_coding Danio_rerio
ENSMUSG00000069867 Pabpn1l poly(A)binding protein nuclear 1-like protein_coding Mus_musculus

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