Institute of Cardiovascular Regeneration Webtool Repository

Source ID	Type	Tax ID	Position
ENSG00000167515-ENSG00000205022	CGP	9606	16:88856220-88866660
Gene	Transcript	Position	Biotype
ENSG00000141012 (GALNS) galactosamine (N-acetyl)-6-sulfatase	ENST00000268695 (GALNS-001)	88813734-88856966	protein_coding
ENST00000561812 (GALNS-010)	88836241-88838922	processed_transcript
ENST00000562593 (GALNS-004)	88813735-88845624	retained_intron
ENST00000562831 (GALNS-009)	88835755-88856575	protein_coding
ENST00000562931 (GALNS-012)	88832034-88837849	processed_transcript
ENST00000564263 (GALNS-013)	88824789-88827116	retained_intron
ENST00000565364 (GALNS-003)	88840335-88856842	processed_transcript
ENST00000566563 (GALNS-011)	88835729-88837889	retained_intron
ENST00000567525 (GALNS-006)	88813736-88856826	nonsense_mediated_decay
ENST00000567779 (GALNS-007)	88840698-88842045	retained_intron
ENST00000568311 (GALNS-002)	88855128-88856970	protein_coding
ENST00000568613 (GALNS-005)	88814323-88856826	nonsense_mediated_decay
ENST00000569433 (GALNS-008)	88855753-88856931	protein_coding
ENSG00000167515 (TRAPPC2L) trafficking protein particle complex 2-like	ENST00000301021 (TRAPPC2L-001)	88857086-88862686	protein_coding
ENST00000561840 (TRAPPC2L-011)	88857168-88861049	protein_coding
ENST00000562125 (TRAPPC2L-006)	88859301-88861105	retained_intron
ENST00000562792 (TRAPPC2L-012)	88857127-88859729	nonsense_mediated_decay
ENST00000563514 (TRAPPC2L-014)	88859771-88861130	retained_intron
ENST00000564365 (TRAPPC2L-003)	88856220-88861415	protein_coding
ENST00000564404 (TRAPPC2L-007)	88857144-88861110	nonsense_mediated_decay
ENST00000564547 (TRAPPC2L-013)	88857098-88859512	retained_intron
ENST00000565205 (TRAPPC2L-005)	88857131-88861287	nonsense_mediated_decay
ENST00000565309 (TRAPPC2L-009)	88858617-88860186	retained_intron
ENST00000565504 (TRAPPC2L-002)	88857127-88862676	protein_coding
ENST00000567312 (TRAPPC2L-004)	88857135-88861112	protein_coding
ENST00000567895 (TRAPPC2L-010)	88857086-88861351	protein_coding
ENST00000568583 (TRAPPC2L-008)	88857141-88861309	protein_coding
ENSG00000205022 (PABPN1L) poly(A) binding protein, nuclear 1-like (cytoplasmic)	ENST00000411789 (PABPN1L-003)	88863686-88866660	protein_coding
ENST00000419291 (PABPN1L-001)	88863333-88866618	protein_coding
ENST00000547152 (PABPN1L-002)	88863686-88866660	protein_coding

Notice (8): Undefined index: CIL_00032Z_0002 [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_00032Z_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000141012' => 'galactosamine (N-acetyl)-6-sulfatase',
		'ENSG00000167515' => 'trafficking protein particle complex 2-like',
		'ENSG00000205022' => 'poly(A) binding protein, nuclear 1-like (cytoplasmic)',
		'ENSMUSG00000015013' => 'trafficking protein particle complex 2-like',
		'ENSMUSG00000069867' => 'poly(A)binding protein nuclear 1-like',
		'ENSMUSG00000098500' => 'microRNA 6396'
	),
	'gene_name_arr' => array(
		'ENSG00000141012' => 'GALNS',
		'ENSG00000167515' => 'TRAPPC2L',
		'ENSG00000205022' => 'PABPN1L',
		'ENSMUSG00000015013' => 'Trappc2l',
		'ENSMUSG00000069867' => 'Pabpn1l',
		'ENSMUSG00000098500' => 'Mir6396'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 4 => 'Adrenal',
		(int) 10 => 'Bladder',
		(int) 12 => 'Brain',
		(int) 19 => 'Breast',
		(int) 25 => 'Colon',
		(int) 33 => 'Heart',
		(int) 41 => 'Kidney',
		(int) 49 => 'Liver',
		(int) 56 => 'Lung',
		(int) 62 => 'Muscle',
		(int) 70 => 'Ovary',
		(int) 80 => 'Placenta',
		(int) 83 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 33,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000268695' => array(
			'start' => '88813734',
			'end' => '88856966',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'GALNS-001'
		),
		'ENST00000561812' => array(
			'start' => '88836241',
			'end' => '88838922',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'GALNS-010'
		),
		'ENST00000562593' => array(
			'start' => '88813735',
			'end' => '88845624',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'GALNS-004'
		),
		'ENST00000562831' => array(
			'start' => '88835755',
			'end' => '88856575',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'GALNS-009'
		),
		'ENST00000562931' => array(
			'start' => '88832034',
			'end' => '88837849',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'GALNS-012'
		),
		'ENST00000564263' => array(
			'start' => '88824789',
			'end' => '88827116',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'GALNS-013'
		),
		'ENST00000565364' => array(
			'start' => '88840335',
			'end' => '88856842',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'GALNS-003'
		),
		'ENST00000566563' => array(
			'start' => '88835729',
			'end' => '88837889',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'GALNS-011'
		),
		'ENST00000567525' => array(
			'start' => '88813736',
			'end' => '88856826',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'GALNS-006'
		),
		'ENST00000567779' => array(
			'start' => '88840698',
			'end' => '88842045',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'GALNS-007'
		),
		'ENST00000568311' => array(
			'start' => '88855128',
			'end' => '88856970',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'GALNS-002'
		),
		'ENST00000568613' => array(
			'start' => '88814323',
			'end' => '88856826',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'GALNS-005'
		),
		'ENST00000569433' => array(
			'start' => '88855753',
			'end' => '88856931',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'GALNS-008'
		),
		'ENST00000301021' => array(
			'start' => '88857086',
			'end' => '88862686',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TRAPPC2L-001'
		),
		'ENST00000561840' => array(
			'start' => '88857168',
			'end' => '88861049',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TRAPPC2L-011'
		),
		'ENST00000562125' => array(
			'start' => '88859301',
			'end' => '88861105',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'TRAPPC2L-006'
		),
		'ENST00000562792' => array(
			'start' => '88857127',
			'end' => '88859729',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'TRAPPC2L-012'
		),
		'ENST00000563514' => array(
			'start' => '88859771',
			'end' => '88861130',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'TRAPPC2L-014'
		),
		'ENST00000564365' => array(
			'start' => '88856220',
			'end' => '88861415',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TRAPPC2L-003'
		),
		'ENST00000564404' => array(
			'start' => '88857144',
			'end' => '88861110',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'TRAPPC2L-007'
		),
		'ENST00000564547' => array(
			'start' => '88857098',
			'end' => '88859512',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'TRAPPC2L-013'
		),
		'ENST00000565205' => array(
			'start' => '88857131',
			'end' => '88861287',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'TRAPPC2L-005'
		),
		'ENST00000565309' => array(
			'start' => '88858617',
			'end' => '88860186',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'TRAPPC2L-009'
		),
		'ENST00000565504' => array(
			'start' => '88857127',
			'end' => '88862676',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TRAPPC2L-002'
		),
		'ENST00000567312' => array(
			'start' => '88857135',
			'end' => '88861112',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TRAPPC2L-004'
		),
		'ENST00000567895' => array(
			'start' => '88857086',
			'end' => '88861351',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TRAPPC2L-010'
		),
		'ENST00000568583' => array(
			'start' => '88857141',
			'end' => '88861309',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TRAPPC2L-008'
		),
		'ENST00000411789' => array(
			'start' => '88863686',
			'end' => '88866660',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'PABPN1L-003'
		),
		'ENST00000419291' => array(
			'start' => '88863333',
			'end' => '88866618',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'PABPN1L-001'
		),
		'ENST00000547152' => array(
			'start' => '88863686',
			'end' => '88866660',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'PABPN1L-002'
		),
		'ENSMUST00000015157' => array(
			'start' => '122611626',
			'end' => '122615588',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Trappc2l-201'
		),
		'ENSMUST00000093059' => array(
			'start' => '122619471',
			'end' => '122622739',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Pabpn1l-001'
		),
		'ENSMUST00000183603' => array(
			'start' => '122622265',
			'end' => '122622375',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'Mir6396-201'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_00032Z_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_00032Z_0001' => array(
		'genes_in_region' => array(
			'ENSG00000141012' => array(
				[maximum depth reached]
			),
			'ENSG00000167515' => array(
				[maximum depth reached]
			),
			'ENSG00000205022' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adrenal',
			(int) 1 => 'Bladder',
			(int) 2 => 'Brain',
			(int) 3 => 'Breast',
			(int) 4 => 'Colon',
			(int) 5 => 'Heart',
			(int) 6 => 'Kidney',
			(int) 7 => 'Liver',
			(int) 8 => 'Lung',
			(int) 9 => 'Muscle',
			(int) 10 => 'Ovary',
			(int) 11 => 'Placenta',
			(int) 12 => 'Testis',
			(int) 13 => 'Bladder',
			(int) 14 => 'Colon',
			(int) 15 => 'Kidney',
			(int) 16 => 'Liver',
			(int) 17 => 'Lung',
			(int) 18 => 'Ovary',
			(int) 19 => 'Lung',
			(int) 20 => 'Kidney',
			(int) 21 => 'Adipose',
			(int) 22 => 'Adrenal',
			(int) 23 => 'Breast',
			(int) 24 => 'Colon',
			(int) 25 => 'Heart',
			(int) 26 => 'Kidney',
			(int) 27 => 'Liver',
			(int) 28 => 'Lung',
			(int) 29 => 'Ovary',
			(int) 30 => 'Testis',
			(int) 31 => 'Liver',
			(int) 32 => 'Ovary',
			(int) 33 => 'Testis',
			(int) 34 => 'Adipose',
			(int) 35 => 'Adrenal',
			(int) 36 => 'Brain',
			(int) 37 => 'Breast',
			(int) 38 => 'Colon',
			(int) 39 => 'Heart',
			(int) 40 => 'Kidney',
			(int) 41 => 'Muscle',
			(int) 42 => 'Ovary',
			(int) 43 => 'Placenta',
			(int) 44 => 'Testis',
			(int) 45 => 'Adrenal',
			(int) 46 => 'Brain',
			(int) 47 => 'Breast',
			(int) 48 => 'Colon',
			(int) 49 => 'Heart',
			(int) 50 => 'Lung',
			(int) 51 => 'Muscle',
			(int) 52 => 'Ovary',
			(int) 53 => 'Brain',
			(int) 54 => 'Heart',
			(int) 55 => 'Muscle',
			(int) 56 => 'Lung',
			(int) 57 => 'Muscle',
			(int) 58 => 'Colon',
			(int) 59 => 'Liver',
			(int) 60 => 'Adipose',
			(int) 61 => 'Adrenal',
			(int) 62 => 'Brain',
			(int) 63 => 'Breast',
			(int) 64 => 'Colon',
			(int) 65 => 'Heart',
			(int) 66 => 'Kidney',
			(int) 67 => 'Muscle',
			(int) 68 => 'Ovary',
			(int) 69 => 'Testis',
			(int) 70 => 'Kidney',
			(int) 71 => 'Muscle',
			(int) 72 => 'Adipose',
			(int) 73 => 'Brain',
			(int) 74 => 'Breast',
			(int) 75 => 'Colon',
			(int) 76 => 'Heart',
			(int) 77 => 'Kidney',
			(int) 78 => 'Liver',
			(int) 79 => 'Muscle',
			(int) 80 => 'Ovary',
			(int) 81 => 'Placenta',
			(int) 82 => 'Ovary',
			(int) 83 => 'Adrenal',
			(int) 84 => 'Brain',
			(int) 85 => 'Heart',
			(int) 86 => 'Ovary',
			(int) 87 => 'Testis',
			(int) 88 => 'Liver'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000141012' => 'galactosamine (N-acetyl)-6-sulfatase',
	'ENSG00000167515' => 'trafficking protein particle complex 2-like',
	'ENSG00000205022' => 'poly(A) binding protein, nuclear 1-like (cytoplasmic)',
	'ENSMUSG00000015013' => 'trafficking protein particle complex 2-like',
	'ENSMUSG00000069867' => 'poly(A)binding protein nuclear 1-like',
	'ENSMUSG00000098500' => 'microRNA 6396'
)
$gene_name_arr = array(
	'ENSG00000141012' => 'GALNS',
	'ENSG00000167515' => 'TRAPPC2L',
	'ENSG00000205022' => 'PABPN1L',
	'ENSMUSG00000015013' => 'Trappc2l',
	'ENSMUSG00000069867' => 'Pabpn1l',
	'ENSMUSG00000098500' => 'Mir6396'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_00032Z_0001',
			'tax_id' => '9606',
			'chromosome' => '16',
			'seq_start' => '88856220',
			'seq_end' => '88866660',
			'region_length' => '10440',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000167515-ENSG00000205022'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_00032Z_0002',
			'tax_id' => '10090',
			'chromosome' => '8',
			'seq_start' => '122611626',
			'seq_end' => '122622739',
			'region_length' => '11113',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000015013-ENSMUSG00000069867'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 4 => 'Adrenal',
	(int) 10 => 'Bladder',
	(int) 12 => 'Brain',
	(int) 19 => 'Breast',
	(int) 25 => 'Colon',
	(int) 33 => 'Heart',
	(int) 41 => 'Kidney',
	(int) 49 => 'Liver',
	(int) 56 => 'Lung',
	(int) 62 => 'Muscle',
	(int) 70 => 'Ovary',
	(int) 80 => 'Placenta',
	(int) 83 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 33
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000268695' => array(
		'start' => '88813734',
		'end' => '88856966',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'GALNS-001'
	),
	'ENST00000561812' => array(
		'start' => '88836241',
		'end' => '88838922',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'GALNS-010'
	),
	'ENST00000562593' => array(
		'start' => '88813735',
		'end' => '88845624',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'GALNS-004'
	),
	'ENST00000562831' => array(
		'start' => '88835755',
		'end' => '88856575',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'GALNS-009'
	),
	'ENST00000562931' => array(
		'start' => '88832034',
		'end' => '88837849',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'GALNS-012'
	),
	'ENST00000564263' => array(
		'start' => '88824789',
		'end' => '88827116',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'GALNS-013'
	),
	'ENST00000565364' => array(
		'start' => '88840335',
		'end' => '88856842',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'GALNS-003'
	),
	'ENST00000566563' => array(
		'start' => '88835729',
		'end' => '88837889',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'GALNS-011'
	),
	'ENST00000567525' => array(
		'start' => '88813736',
		'end' => '88856826',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'GALNS-006'
	),
	'ENST00000567779' => array(
		'start' => '88840698',
		'end' => '88842045',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'GALNS-007'
	),
	'ENST00000568311' => array(
		'start' => '88855128',
		'end' => '88856970',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'GALNS-002'
	),
	'ENST00000568613' => array(
		'start' => '88814323',
		'end' => '88856826',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'GALNS-005'
	),
	'ENST00000569433' => array(
		'start' => '88855753',
		'end' => '88856931',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'GALNS-008'
	),
	'ENST00000301021' => array(
		'start' => '88857086',
		'end' => '88862686',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TRAPPC2L-001'
	),
	'ENST00000561840' => array(
		'start' => '88857168',
		'end' => '88861049',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TRAPPC2L-011'
	),
	'ENST00000562125' => array(
		'start' => '88859301',
		'end' => '88861105',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'TRAPPC2L-006'
	),
	'ENST00000562792' => array(
		'start' => '88857127',
		'end' => '88859729',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'TRAPPC2L-012'
	),
	'ENST00000563514' => array(
		'start' => '88859771',
		'end' => '88861130',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'TRAPPC2L-014'
	),
	'ENST00000564365' => array(
		'start' => '88856220',
		'end' => '88861415',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TRAPPC2L-003'
	),
	'ENST00000564404' => array(
		'start' => '88857144',
		'end' => '88861110',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'TRAPPC2L-007'
	),
	'ENST00000564547' => array(
		'start' => '88857098',
		'end' => '88859512',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'TRAPPC2L-013'
	),
	'ENST00000565205' => array(
		'start' => '88857131',
		'end' => '88861287',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'TRAPPC2L-005'
	),
	'ENST00000565309' => array(
		'start' => '88858617',
		'end' => '88860186',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'TRAPPC2L-009'
	),
	'ENST00000565504' => array(
		'start' => '88857127',
		'end' => '88862676',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TRAPPC2L-002'
	),
	'ENST00000567312' => array(
		'start' => '88857135',
		'end' => '88861112',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TRAPPC2L-004'
	),
	'ENST00000567895' => array(
		'start' => '88857086',
		'end' => '88861351',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TRAPPC2L-010'
	),
	'ENST00000568583' => array(
		'start' => '88857141',
		'end' => '88861309',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TRAPPC2L-008'
	),
	'ENST00000411789' => array(
		'start' => '88863686',
		'end' => '88866660',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'PABPN1L-003'
	),
	'ENST00000419291' => array(
		'start' => '88863333',
		'end' => '88866618',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'PABPN1L-001'
	),
	'ENST00000547152' => array(
		'start' => '88863686',
		'end' => '88866660',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'PABPN1L-002'
	),
	'ENSMUST00000015157' => array(
		'start' => '122611626',
		'end' => '122615588',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Trappc2l-201'
	),
	'ENSMUST00000093059' => array(
		'start' => '122619471',
		'end' => '122622739',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Pabpn1l-001'
	),
	'ENSMUST00000183603' => array(
		'start' => '122622265',
		'end' => '122622375',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'Mir6396-201'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_00032Z_0001' => array(
		'genes_in_region' => array(
			'ENSG00000141012' => array(
				[maximum depth reached]
			),
			'ENSG00000167515' => array(
				[maximum depth reached]
			),
			'ENSG00000205022' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adrenal',
			(int) 1 => 'Bladder',
			(int) 2 => 'Brain',
			(int) 3 => 'Breast',
			(int) 4 => 'Colon',
			(int) 5 => 'Heart',
			(int) 6 => 'Kidney',
			(int) 7 => 'Liver',
			(int) 8 => 'Lung',
			(int) 9 => 'Muscle',
			(int) 10 => 'Ovary',
			(int) 11 => 'Placenta',
			(int) 12 => 'Testis',
			(int) 13 => 'Bladder',
			(int) 14 => 'Colon',
			(int) 15 => 'Kidney',
			(int) 16 => 'Liver',
			(int) 17 => 'Lung',
			(int) 18 => 'Ovary',
			(int) 19 => 'Lung',
			(int) 20 => 'Kidney',
			(int) 21 => 'Adipose',
			(int) 22 => 'Adrenal',
			(int) 23 => 'Breast',
			(int) 24 => 'Colon',
			(int) 25 => 'Heart',
			(int) 26 => 'Kidney',
			(int) 27 => 'Liver',
			(int) 28 => 'Lung',
			(int) 29 => 'Ovary',
			(int) 30 => 'Testis',
			(int) 31 => 'Liver',
			(int) 32 => 'Ovary',
			(int) 33 => 'Testis',
			(int) 34 => 'Adipose',
			(int) 35 => 'Adrenal',
			(int) 36 => 'Brain',
			(int) 37 => 'Breast',
			(int) 38 => 'Colon',
			(int) 39 => 'Heart',
			(int) 40 => 'Kidney',
			(int) 41 => 'Muscle',
			(int) 42 => 'Ovary',
			(int) 43 => 'Placenta',
			(int) 44 => 'Testis',
			(int) 45 => 'Adrenal',
			(int) 46 => 'Brain',
			(int) 47 => 'Breast',
			(int) 48 => 'Colon',
			(int) 49 => 'Heart',
			(int) 50 => 'Lung',
			(int) 51 => 'Muscle',
			(int) 52 => 'Ovary',
			(int) 53 => 'Brain',
			(int) 54 => 'Heart',
			(int) 55 => 'Muscle',
			(int) 56 => 'Lung',
			(int) 57 => 'Muscle',
			(int) 58 => 'Colon',
			(int) 59 => 'Liver',
			(int) 60 => 'Adipose',
			(int) 61 => 'Adrenal',
			(int) 62 => 'Brain',
			(int) 63 => 'Breast',
			(int) 64 => 'Colon',
			(int) 65 => 'Heart',
			(int) 66 => 'Kidney',
			(int) 67 => 'Muscle',
			(int) 68 => 'Ovary',
			(int) 69 => 'Testis',
			(int) 70 => 'Kidney',
			(int) 71 => 'Muscle',
			(int) 72 => 'Adipose',
			(int) 73 => 'Brain',
			(int) 74 => 'Breast',
			(int) 75 => 'Colon',
			(int) 76 => 'Heart',
			(int) 77 => 'Kidney',
			(int) 78 => 'Liver',
			(int) 79 => 'Muscle',
			(int) 80 => 'Ovary',
			(int) 81 => 'Placenta',
			(int) 82 => 'Ovary',
			(int) 83 => 'Adrenal',
			(int) 84 => 'Brain',
			(int) 85 => 'Heart',
			(int) 86 => 'Ovary',
			(int) 87 => 'Testis',
			(int) 88 => 'Liver'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_00032Z_0002',
		'tax_id' => '10090',
		'chromosome' => '8',
		'seq_start' => '122611626',
		'seq_end' => '122622739',
		'region_length' => '11113',
		'region_type' => 'CGP',
		'el_id' => 'ENSMUSG00000015013-ENSMUSG00000069867'
	)
)
$gene_el = array(
	'ENST00000411789' => array(
		'Ovary' => array(
			'average_FPKM' => '0.048',
			'stddev_FPKM' => '0.00'
		)
	),
	'ENST00000419291' => array(
		'Adrenal' => array(
			'average_FPKM' => '0.285',
			'stddev_FPKM' => '0.00'
		),
		'Brain' => array(
			'average_FPKM' => '0.027',
			'stddev_FPKM' => '0.00'
		),
		'Heart' => array(
			'average_FPKM' => '0.022',
			'stddev_FPKM' => '0.00'
		),
		'Ovary' => array(
			'average_FPKM' => '0.060',
			'stddev_FPKM' => '0.01'
		),
		'Testis' => array(
			'average_FPKM' => '0.047',
			'stddev_FPKM' => '0.02'
		)
	),
	'ENST00000547152' => array(
		'Liver' => array(
			'average_FPKM' => '0.070',
			'stddev_FPKM' => '0.00'
		)
	)
)
$gene_key = 'ENSG00000205022'
$is_first = false
$tran_el = array(
	'Liver' => array(
		'average_FPKM' => '0.070',
		'stddev_FPKM' => '0.00'
	)
)
$tran_key = 'ENST00000547152'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_00032Z_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000141012' => 'galactosamine (N-acetyl)-6-sulfatase',
		'ENSG00000167515' => 'trafficking protein particle complex 2-like',
		'ENSG00000205022' => 'poly(A) binding protein, nuclear 1-like (cytoplasmic)',
		'ENSMUSG00000015013' => 'trafficking protein particle complex 2-like',
		'ENSMUSG00000069867' => 'poly(A)binding protein nuclear 1-like',
		'ENSMUSG00000098500' => 'microRNA 6396'
	),
	'gene_name_arr' => array(
		'ENSG00000141012' => 'GALNS',
		'ENSG00000167515' => 'TRAPPC2L',
		'ENSG00000205022' => 'PABPN1L',
		'ENSMUSG00000015013' => 'Trappc2l',
		'ENSMUSG00000069867' => 'Pabpn1l',
		'ENSMUSG00000098500' => 'Mir6396'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 4 => 'Adrenal',
		(int) 10 => 'Bladder',
		(int) 12 => 'Brain',
		(int) 19 => 'Breast',
		(int) 25 => 'Colon',
		(int) 33 => 'Heart',
		(int) 41 => 'Kidney',
		(int) 49 => 'Liver',
		(int) 56 => 'Lung',
		(int) 62 => 'Muscle',
		(int) 70 => 'Ovary',
		(int) 80 => 'Placenta',
		(int) 83 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 33,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000268695' => array(
			'start' => '88813734',
			'end' => '88856966',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'GALNS-001'
		),
		'ENST00000561812' => array(
			'start' => '88836241',
			'end' => '88838922',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'GALNS-010'
		),
		'ENST00000562593' => array(
			'start' => '88813735',
			'end' => '88845624',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'GALNS-004'
		),
		'ENST00000562831' => array(
			'start' => '88835755',
			'end' => '88856575',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'GALNS-009'
		),
		'ENST00000562931' => array(
			'start' => '88832034',
			'end' => '88837849',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'GALNS-012'
		),
		'ENST00000564263' => array(
			'start' => '88824789',
			'end' => '88827116',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'GALNS-013'
		),
		'ENST00000565364' => array(
			'start' => '88840335',
			'end' => '88856842',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'GALNS-003'
		),
		'ENST00000566563' => array(
			'start' => '88835729',
			'end' => '88837889',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'GALNS-011'
		),
		'ENST00000567525' => array(
			'start' => '88813736',
			'end' => '88856826',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'GALNS-006'
		),
		'ENST00000567779' => array(
			'start' => '88840698',
			'end' => '88842045',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'GALNS-007'
		),
		'ENST00000568311' => array(
			'start' => '88855128',
			'end' => '88856970',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'GALNS-002'
		),
		'ENST00000568613' => array(
			'start' => '88814323',
			'end' => '88856826',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'GALNS-005'
		),
		'ENST00000569433' => array(
			'start' => '88855753',
			'end' => '88856931',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'GALNS-008'
		),
		'ENST00000301021' => array(
			'start' => '88857086',
			'end' => '88862686',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TRAPPC2L-001'
		),
		'ENST00000561840' => array(
			'start' => '88857168',
			'end' => '88861049',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TRAPPC2L-011'
		),
		'ENST00000562125' => array(
			'start' => '88859301',
			'end' => '88861105',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'TRAPPC2L-006'
		),
		'ENST00000562792' => array(
			'start' => '88857127',
			'end' => '88859729',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'TRAPPC2L-012'
		),
		'ENST00000563514' => array(
			'start' => '88859771',
			'end' => '88861130',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'TRAPPC2L-014'
		),
		'ENST00000564365' => array(
			'start' => '88856220',
			'end' => '88861415',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TRAPPC2L-003'
		),
		'ENST00000564404' => array(
			'start' => '88857144',
			'end' => '88861110',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'TRAPPC2L-007'
		),
		'ENST00000564547' => array(
			'start' => '88857098',
			'end' => '88859512',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'TRAPPC2L-013'
		),
		'ENST00000565205' => array(
			'start' => '88857131',
			'end' => '88861287',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'TRAPPC2L-005'
		),
		'ENST00000565309' => array(
			'start' => '88858617',
			'end' => '88860186',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'TRAPPC2L-009'
		),
		'ENST00000565504' => array(
			'start' => '88857127',
			'end' => '88862676',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TRAPPC2L-002'
		),
		'ENST00000567312' => array(
			'start' => '88857135',
			'end' => '88861112',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TRAPPC2L-004'
		),
		'ENST00000567895' => array(
			'start' => '88857086',
			'end' => '88861351',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TRAPPC2L-010'
		),
		'ENST00000568583' => array(
			'start' => '88857141',
			'end' => '88861309',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'TRAPPC2L-008'
		),
		'ENST00000411789' => array(
			'start' => '88863686',
			'end' => '88866660',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'PABPN1L-003'
		),
		'ENST00000419291' => array(
			'start' => '88863333',
			'end' => '88866618',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'PABPN1L-001'
		),
		'ENST00000547152' => array(
			'start' => '88863686',
			'end' => '88866660',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'PABPN1L-002'
		),
		'ENSMUST00000015157' => array(
			'start' => '122611626',
			'end' => '122615588',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Trappc2l-201'
		),
		'ENSMUST00000093059' => array(
			'start' => '122619471',
			'end' => '122622739',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Pabpn1l-001'
		),
		'ENSMUST00000183603' => array(
			'start' => '122622265',
			'end' => '122622375',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'Mir6396-201'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_00032Z_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_00032Z_0001' => array(
		'genes_in_region' => array(
			'ENSG00000141012' => array(
				[maximum depth reached]
			),
			'ENSG00000167515' => array(
				[maximum depth reached]
			),
			'ENSG00000205022' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adrenal',
			(int) 1 => 'Bladder',
			(int) 2 => 'Brain',
			(int) 3 => 'Breast',
			(int) 4 => 'Colon',
			(int) 5 => 'Heart',
			(int) 6 => 'Kidney',
			(int) 7 => 'Liver',
			(int) 8 => 'Lung',
			(int) 9 => 'Muscle',
			(int) 10 => 'Ovary',
			(int) 11 => 'Placenta',
			(int) 12 => 'Testis',
			(int) 13 => 'Bladder',
			(int) 14 => 'Colon',
			(int) 15 => 'Kidney',
			(int) 16 => 'Liver',
			(int) 17 => 'Lung',
			(int) 18 => 'Ovary',
			(int) 19 => 'Lung',
			(int) 20 => 'Kidney',
			(int) 21 => 'Adipose',
			(int) 22 => 'Adrenal',
			(int) 23 => 'Breast',
			(int) 24 => 'Colon',
			(int) 25 => 'Heart',
			(int) 26 => 'Kidney',
			(int) 27 => 'Liver',
			(int) 28 => 'Lung',
			(int) 29 => 'Ovary',
			(int) 30 => 'Testis',
			(int) 31 => 'Liver',
			(int) 32 => 'Ovary',
			(int) 33 => 'Testis',
			(int) 34 => 'Adipose',
			(int) 35 => 'Adrenal',
			(int) 36 => 'Brain',
			(int) 37 => 'Breast',
			(int) 38 => 'Colon',
			(int) 39 => 'Heart',
			(int) 40 => 'Kidney',
			(int) 41 => 'Muscle',
			(int) 42 => 'Ovary',
			(int) 43 => 'Placenta',
			(int) 44 => 'Testis',
			(int) 45 => 'Adrenal',
			(int) 46 => 'Brain',
			(int) 47 => 'Breast',
			(int) 48 => 'Colon',
			(int) 49 => 'Heart',
			(int) 50 => 'Lung',
			(int) 51 => 'Muscle',
			(int) 52 => 'Ovary',
			(int) 53 => 'Brain',
			(int) 54 => 'Heart',
			(int) 55 => 'Muscle',
			(int) 56 => 'Lung',
			(int) 57 => 'Muscle',
			(int) 58 => 'Colon',
			(int) 59 => 'Liver',
			(int) 60 => 'Adipose',
			(int) 61 => 'Adrenal',
			(int) 62 => 'Brain',
			(int) 63 => 'Breast',
			(int) 64 => 'Colon',
			(int) 65 => 'Heart',
			(int) 66 => 'Kidney',
			(int) 67 => 'Muscle',
			(int) 68 => 'Ovary',
			(int) 69 => 'Testis',
			(int) 70 => 'Kidney',
			(int) 71 => 'Muscle',
			(int) 72 => 'Adipose',
			(int) 73 => 'Brain',
			(int) 74 => 'Breast',
			(int) 75 => 'Colon',
			(int) 76 => 'Heart',
			(int) 77 => 'Kidney',
			(int) 78 => 'Liver',
			(int) 79 => 'Muscle',
			(int) 80 => 'Ovary',
			(int) 81 => 'Placenta',
			(int) 82 => 'Ovary',
			(int) 83 => 'Adrenal',
			(int) 84 => 'Brain',
			(int) 85 => 'Heart',
			(int) 86 => 'Ovary',
			(int) 87 => 'Testis',
			(int) 88 => 'Liver'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000141012' => 'galactosamine (N-acetyl)-6-sulfatase',
	'ENSG00000167515' => 'trafficking protein particle complex 2-like',
	'ENSG00000205022' => 'poly(A) binding protein, nuclear 1-like (cytoplasmic)',
	'ENSMUSG00000015013' => 'trafficking protein particle complex 2-like',
	'ENSMUSG00000069867' => 'poly(A)binding protein nuclear 1-like',
	'ENSMUSG00000098500' => 'microRNA 6396'
)
$gene_name_arr = array(
	'ENSG00000141012' => 'GALNS',
	'ENSG00000167515' => 'TRAPPC2L',
	'ENSG00000205022' => 'PABPN1L',
	'ENSMUSG00000015013' => 'Trappc2l',
	'ENSMUSG00000069867' => 'Pabpn1l',
	'ENSMUSG00000098500' => 'Mir6396'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_00032Z_0001',
			'tax_id' => '9606',
			'chromosome' => '16',
			'seq_start' => '88856220',
			'seq_end' => '88866660',
			'region_length' => '10440',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000167515-ENSG00000205022'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_00032Z_0002',
			'tax_id' => '10090',
			'chromosome' => '8',
			'seq_start' => '122611626',
			'seq_end' => '122622739',
			'region_length' => '11113',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000015013-ENSMUSG00000069867'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 4 => 'Adrenal',
	(int) 10 => 'Bladder',
	(int) 12 => 'Brain',
	(int) 19 => 'Breast',
	(int) 25 => 'Colon',
	(int) 33 => 'Heart',
	(int) 41 => 'Kidney',
	(int) 49 => 'Liver',
	(int) 56 => 'Lung',
	(int) 62 => 'Muscle',
	(int) 70 => 'Ovary',
	(int) 80 => 'Placenta',
	(int) 83 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 33
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000268695' => array(
		'start' => '88813734',
		'end' => '88856966',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'GALNS-001'
	),
	'ENST00000561812' => array(
		'start' => '88836241',
		'end' => '88838922',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'GALNS-010'
	),
	'ENST00000562593' => array(
		'start' => '88813735',
		'end' => '88845624',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'GALNS-004'
	),
	'ENST00000562831' => array(
		'start' => '88835755',
		'end' => '88856575',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'GALNS-009'
	),
	'ENST00000562931' => array(
		'start' => '88832034',
		'end' => '88837849',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'GALNS-012'
	),
	'ENST00000564263' => array(
		'start' => '88824789',
		'end' => '88827116',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'GALNS-013'
	),
	'ENST00000565364' => array(
		'start' => '88840335',
		'end' => '88856842',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'GALNS-003'
	),
	'ENST00000566563' => array(
		'start' => '88835729',
		'end' => '88837889',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'GALNS-011'
	),
	'ENST00000567525' => array(
		'start' => '88813736',
		'end' => '88856826',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'GALNS-006'
	),
	'ENST00000567779' => array(
		'start' => '88840698',
		'end' => '88842045',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'GALNS-007'
	),
	'ENST00000568311' => array(
		'start' => '88855128',
		'end' => '88856970',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'GALNS-002'
	),
	'ENST00000568613' => array(
		'start' => '88814323',
		'end' => '88856826',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'GALNS-005'
	),
	'ENST00000569433' => array(
		'start' => '88855753',
		'end' => '88856931',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'GALNS-008'
	),
	'ENST00000301021' => array(
		'start' => '88857086',
		'end' => '88862686',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TRAPPC2L-001'
	),
	'ENST00000561840' => array(
		'start' => '88857168',
		'end' => '88861049',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TRAPPC2L-011'
	),
	'ENST00000562125' => array(
		'start' => '88859301',
		'end' => '88861105',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'TRAPPC2L-006'
	),
	'ENST00000562792' => array(
		'start' => '88857127',
		'end' => '88859729',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'TRAPPC2L-012'
	),
	'ENST00000563514' => array(
		'start' => '88859771',
		'end' => '88861130',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'TRAPPC2L-014'
	),
	'ENST00000564365' => array(
		'start' => '88856220',
		'end' => '88861415',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TRAPPC2L-003'
	),
	'ENST00000564404' => array(
		'start' => '88857144',
		'end' => '88861110',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'TRAPPC2L-007'
	),
	'ENST00000564547' => array(
		'start' => '88857098',
		'end' => '88859512',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'TRAPPC2L-013'
	),
	'ENST00000565205' => array(
		'start' => '88857131',
		'end' => '88861287',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'TRAPPC2L-005'
	),
	'ENST00000565309' => array(
		'start' => '88858617',
		'end' => '88860186',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'TRAPPC2L-009'
	),
	'ENST00000565504' => array(
		'start' => '88857127',
		'end' => '88862676',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TRAPPC2L-002'
	),
	'ENST00000567312' => array(
		'start' => '88857135',
		'end' => '88861112',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TRAPPC2L-004'
	),
	'ENST00000567895' => array(
		'start' => '88857086',
		'end' => '88861351',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TRAPPC2L-010'
	),
	'ENST00000568583' => array(
		'start' => '88857141',
		'end' => '88861309',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'TRAPPC2L-008'
	),
	'ENST00000411789' => array(
		'start' => '88863686',
		'end' => '88866660',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'PABPN1L-003'
	),
	'ENST00000419291' => array(
		'start' => '88863333',
		'end' => '88866618',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'PABPN1L-001'
	),
	'ENST00000547152' => array(
		'start' => '88863686',
		'end' => '88866660',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'PABPN1L-002'
	),
	'ENSMUST00000015157' => array(
		'start' => '122611626',
		'end' => '122615588',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Trappc2l-201'
	),
	'ENSMUST00000093059' => array(
		'start' => '122619471',
		'end' => '122622739',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Pabpn1l-001'
	),
	'ENSMUST00000183603' => array(
		'start' => '122622265',
		'end' => '122622375',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'Mir6396-201'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_00032Z_0001' => array(
		'genes_in_region' => array(
			'ENSG00000141012' => array(
				[maximum depth reached]
			),
			'ENSG00000167515' => array(
				[maximum depth reached]
			),
			'ENSG00000205022' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adrenal',
			(int) 1 => 'Bladder',
			(int) 2 => 'Brain',
			(int) 3 => 'Breast',
			(int) 4 => 'Colon',
			(int) 5 => 'Heart',
			(int) 6 => 'Kidney',
			(int) 7 => 'Liver',
			(int) 8 => 'Lung',
			(int) 9 => 'Muscle',
			(int) 10 => 'Ovary',
			(int) 11 => 'Placenta',
			(int) 12 => 'Testis',
			(int) 13 => 'Bladder',
			(int) 14 => 'Colon',
			(int) 15 => 'Kidney',
			(int) 16 => 'Liver',
			(int) 17 => 'Lung',
			(int) 18 => 'Ovary',
			(int) 19 => 'Lung',
			(int) 20 => 'Kidney',
			(int) 21 => 'Adipose',
			(int) 22 => 'Adrenal',
			(int) 23 => 'Breast',
			(int) 24 => 'Colon',
			(int) 25 => 'Heart',
			(int) 26 => 'Kidney',
			(int) 27 => 'Liver',
			(int) 28 => 'Lung',
			(int) 29 => 'Ovary',
			(int) 30 => 'Testis',
			(int) 31 => 'Liver',
			(int) 32 => 'Ovary',
			(int) 33 => 'Testis',
			(int) 34 => 'Adipose',
			(int) 35 => 'Adrenal',
			(int) 36 => 'Brain',
			(int) 37 => 'Breast',
			(int) 38 => 'Colon',
			(int) 39 => 'Heart',
			(int) 40 => 'Kidney',
			(int) 41 => 'Muscle',
			(int) 42 => 'Ovary',
			(int) 43 => 'Placenta',
			(int) 44 => 'Testis',
			(int) 45 => 'Adrenal',
			(int) 46 => 'Brain',
			(int) 47 => 'Breast',
			(int) 48 => 'Colon',
			(int) 49 => 'Heart',
			(int) 50 => 'Lung',
			(int) 51 => 'Muscle',
			(int) 52 => 'Ovary',
			(int) 53 => 'Brain',
			(int) 54 => 'Heart',
			(int) 55 => 'Muscle',
			(int) 56 => 'Lung',
			(int) 57 => 'Muscle',
			(int) 58 => 'Colon',
			(int) 59 => 'Liver',
			(int) 60 => 'Adipose',
			(int) 61 => 'Adrenal',
			(int) 62 => 'Brain',
			(int) 63 => 'Breast',
			(int) 64 => 'Colon',
			(int) 65 => 'Heart',
			(int) 66 => 'Kidney',
			(int) 67 => 'Muscle',
			(int) 68 => 'Ovary',
			(int) 69 => 'Testis',
			(int) 70 => 'Kidney',
			(int) 71 => 'Muscle',
			(int) 72 => 'Adipose',
			(int) 73 => 'Brain',
			(int) 74 => 'Breast',
			(int) 75 => 'Colon',
			(int) 76 => 'Heart',
			(int) 77 => 'Kidney',
			(int) 78 => 'Liver',
			(int) 79 => 'Muscle',
			(int) 80 => 'Ovary',
			(int) 81 => 'Placenta',
			(int) 82 => 'Ovary',
			(int) 83 => 'Adrenal',
			(int) 84 => 'Brain',
			(int) 85 => 'Heart',
			(int) 86 => 'Ovary',
			(int) 87 => 'Testis',
			(int) 88 => 'Liver'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_00032Z_0002',
		'tax_id' => '10090',
		'chromosome' => '8',
		'seq_start' => '122611626',
		'seq_end' => '122622739',
		'region_length' => '11113',
		'region_type' => 'CGP',
		'el_id' => 'ENSMUSG00000015013-ENSMUSG00000069867'
	)
)
$gene_el = array(
	'ENST00000411789' => array(
		'Ovary' => array(
			'average_FPKM' => '0.048',
			'stddev_FPKM' => '0.00'
		)
	),
	'ENST00000419291' => array(
		'Adrenal' => array(
			'average_FPKM' => '0.285',
			'stddev_FPKM' => '0.00'
		),
		'Brain' => array(
			'average_FPKM' => '0.027',
			'stddev_FPKM' => '0.00'
		),
		'Heart' => array(
			'average_FPKM' => '0.022',
			'stddev_FPKM' => '0.00'
		),
		'Ovary' => array(
			'average_FPKM' => '0.060',
			'stddev_FPKM' => '0.01'
		),
		'Testis' => array(
			'average_FPKM' => '0.047',
			'stddev_FPKM' => '0.02'
		)
	),
	'ENST00000547152' => array(
		'Liver' => array(
			'average_FPKM' => '0.070',
			'stddev_FPKM' => '0.00'
		)
	)
)
$gene_key = 'ENSG00000205022'
$is_first = false
$tran_el = array(
	'Liver' => array(
		'average_FPKM' => '0.070',
		'stddev_FPKM' => '0.00'
	)
)
$tran_key = 'ENST00000547152'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Source ID		Type	Tax ID	Position
ENSMUSG00000015013-ENSMUSG00000069867		CGP	10090	8:122611626-122622739
Gene		Transcript	Position	Biotype

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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