| Source ID |
Type |
Tax ID |
Position |
| ENSMUSG00000069867-ENSMUSG00000006362 |
CGP |
10090 |
8:122619471-122699109  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0006AK_0003 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0006AK_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0006AK_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSDARG00000079012' => 'core-binding factor, runt domain, alpha subunit 2; translocated to, 3',
'ENSDARG00000087996' => 'poly(A) binding protein, nuclear 1, like',
'ENSG00000129993' => 'core-binding factor, runt domain, alpha subunit 2; translocated to, 3',
'ENSG00000205018' => null,
'ENSG00000205022' => 'poly(A) binding protein, nuclear 1-like (cytoplasmic)',
'ENSG00000259881' => null,
'ENSG00000261226' => null,
'ENSMUSG00000006362' => 'core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)',
'ENSMUSG00000069867' => 'poly(A)binding protein nuclear 1-like',
'ENSMUSG00000085917' => 'predicted gene 15899',
'ENSMUSG00000090174' => 'predicted gene 10612',
'ENSMUSG00000098500' => 'microRNA 6396'
),
'gene_name_arr' => array(
'ENSDARG00000079012' => 'CBFA2T3',
'ENSDARG00000087996' => 'pabpn1l',
'ENSG00000129993' => 'CBFA2T3',
'ENSG00000205018' => 'RP11-830F9.6',
'ENSG00000205022' => 'PABPN1L',
'ENSG00000259881' => 'RP11-830F9.5',
'ENSG00000261226' => 'RP11-830F9.7',
'ENSMUSG00000006362' => 'Cbfa2t3',
'ENSMUSG00000069867' => 'Pabpn1l',
'ENSMUSG00000085917' => 'Gm15899',
'ENSMUSG00000090174' => 'Gm10612',
'ENSMUSG00000098500' => 'Mir6396'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 4 => 'Adrenal',
(int) 9 => 'Bladder',
(int) 11 => 'Brain',
(int) 21 => 'Breast',
(int) 26 => 'Colon',
(int) 33 => 'Heart',
(int) 42 => 'Kidney',
(int) 47 => 'Liver',
(int) 59 => 'Lung',
(int) 65 => 'Muscle',
(int) 72 => 'Ovary',
(int) 82 => 'Placenta',
(int) 88 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 37,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENSDART00000021009' => array(
'start' => '56923526',
'end' => '56938884',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-201'
),
'ENSDART00000125275' => array(
'start' => '56900155',
'end' => '56910332',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pabpn1l-201'
),
'ENSDART00000131923' => array(
'start' => '56900642',
'end' => '56911722',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pabpn1l-001'
),
'ENSDART00000135304' => array(
'start' => '56900882',
'end' => '56911657',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pabpn1l-003'
),
'ENSDART00000147792' => array(
'start' => '56900943',
'end' => '56911599',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pabpn1l-002'
),
'ENST00000268679' => array(
'start' => '88874858',
'end' => '88977204',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-001'
),
'ENST00000327483' => array(
'start' => '88874858',
'end' => '88941198',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-002'
),
'ENST00000562719' => array(
'start' => '88892285',
'end' => '88902515',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-008'
),
'ENST00000563640' => array(
'start' => '88892399',
'end' => '88977080',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-009'
),
'ENST00000563856' => array(
'start' => '88875525',
'end' => '88881157',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CBFA2T3-004'
),
'ENST00000563920' => array(
'start' => '88876228',
'end' => '88880036',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CBFA2T3-005'
),
'ENST00000564416' => array(
'start' => '88898088',
'end' => '88941200',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-011'
),
'ENST00000566868' => array(
'start' => '88879430',
'end' => '88881313',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'CBFA2T3-007'
),
'ENST00000569443' => array(
'start' => '88892244',
'end' => '88941844',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-010'
),
'ENST00000569464' => array(
'start' => '88881112',
'end' => '88941809',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-006'
),
'ENST00000570046' => array(
'start' => '88901558',
'end' => '88957775',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-012'
),
'ENST00000378347' => array(
'start' => '88939789',
'end' => '88951524',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-830F9.6-001'
),
'ENST00000411789' => array(
'start' => '88863686',
'end' => '88866660',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PABPN1L-003'
),
'ENST00000419291' => array(
'start' => '88863333',
'end' => '88866618',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PABPN1L-001'
),
'ENST00000547152' => array(
'start' => '88863686',
'end' => '88866660',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PABPN1L-002'
),
'ENST00000562405' => array(
'start' => '88881038',
'end' => '88883919',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-830F9.5-001'
),
'ENST00000562574' => array(
'start' => '88881257',
'end' => '88883715',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-830F9.5-002'
),
'ENST00000565053' => array(
'start' => '88883272',
'end' => '88887136',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-830F9.5-004'
),
'ENST00000569249' => array(
'start' => '88881455',
'end' => '88883926',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-830F9.5-003'
),
'ENST00000561980' => array(
'start' => '88936779',
'end' => '88937756',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-830F9.7-002'
),
'ENST00000564646' => array(
'start' => '88936779',
'end' => '88939651',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-830F9.7-001'
),
'ENSMUST00000006525' => array(
'start' => '122629463',
'end' => '122678072',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cbfa2t3-003'
),
'ENSMUST00000064674' => array(
'start' => '122629938',
'end' => '122678175',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cbfa2t3-002'
),
'ENSMUST00000127984' => array(
'start' => '122628739',
'end' => '122699109',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cbfa2t3-001'
),
'ENSMUST00000134045' => array(
'start' => '122639014',
'end' => '122678694',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cbfa2t3-005'
),
'ENSMUST00000142535' => array(
'start' => '122639018',
'end' => '122646466',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Cbfa2t3-007'
),
'ENSMUST00000147374' => array(
'start' => '122643004',
'end' => '122678111',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Cbfa2t3-006'
),
'ENSMUST00000148630' => array(
'start' => '122650028',
'end' => '122698902',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Cbfa2t3-004'
),
'ENSMUST00000093059' => array(
'start' => '122619471',
'end' => '122622739',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pabpn1l-001'
),
'ENSMUST00000128586' => array(
'start' => '122683602',
'end' => '122683839',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm15899-001'
),
'ENSMUST00000162198' => array(
'start' => '122697860',
'end' => '122700160',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm10612-001'
),
'ENSMUST00000183603' => array(
'start' => '122622265',
'end' => '122622375',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir6396-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0006AK_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0006AK_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0006AK_0001' => array(
'genes_in_region' => array(
'ENSDARG00000079012' => array(
[maximum depth reached]
),
'ENSDARG00000087996' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Liver',
(int) 3 => 'Muscle',
(int) 4 => 'Brain',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Muscle',
(int) 9 => 'Kidney',
(int) 10 => 'Liver',
(int) 11 => 'Liver'
)
),
'CIL_0006AK_0002' => array(
'genes_in_region' => array(
'ENSG00000129993' => array(
[maximum depth reached]
),
'ENSG00000205018' => array(
[maximum depth reached]
),
'ENSG00000205022' => array(
[maximum depth reached]
),
'ENSG00000261226' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Colon',
(int) 1 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 3 => 'Brain',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Lung',
(int) 7 => 'Muscle',
(int) 8 => 'Ovary',
(int) 9 => 'Testis',
(int) 10 => 'Liver',
(int) 11 => 'Liver',
(int) 12 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Colon',
(int) 18 => 'Heart',
(int) 19 => 'Kidney',
(int) 20 => 'Liver',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Brain',
(int) 27 => 'Breast',
(int) 28 => 'Colon',
(int) 29 => 'Liver',
(int) 30 => 'Lung',
(int) 31 => 'Muscle',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Testis',
(int) 35 => 'Ovary',
(int) 36 => 'Heart',
(int) 37 => 'Placenta',
(int) 38 => 'Adipose',
(int) 39 => 'Adrenal',
(int) 40 => 'Brain',
(int) 41 => 'Breast',
(int) 42 => 'Colon',
(int) 43 => 'Heart',
(int) 44 => 'Kidney',
(int) 45 => 'Liver',
(int) 46 => 'Lung',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Ovary',
(int) 51 => 'Adrenal',
(int) 52 => 'Brain',
(int) 53 => 'Heart',
(int) 54 => 'Ovary',
(int) 55 => 'Testis',
(int) 56 => 'Liver',
(int) 57 => 'Brain',
(int) 58 => 'Muscle',
(int) 59 => 'Colon',
(int) 60 => 'Liver',
(int) 61 => 'Ovary',
(int) 62 => 'Bladder',
(int) 63 => 'Brain',
(int) 64 => 'Breast',
(int) 65 => 'Heart',
(int) 66 => 'Lung',
(int) 67 => 'Muscle',
(int) 68 => 'Ovary',
(int) 69 => 'Placenta',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Adrenal',
(int) 73 => 'Brain',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Heart',
(int) 77 => 'Kidney',
(int) 78 => 'Liver',
(int) 79 => 'Lung',
(int) 80 => 'Ovary',
(int) 81 => 'Placenta',
(int) 82 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSDARG00000079012' => 'core-binding factor, runt domain, alpha subunit 2; translocated to, 3',
'ENSDARG00000087996' => 'poly(A) binding protein, nuclear 1, like',
'ENSG00000129993' => 'core-binding factor, runt domain, alpha subunit 2; translocated to, 3',
'ENSG00000205018' => null,
'ENSG00000205022' => 'poly(A) binding protein, nuclear 1-like (cytoplasmic)',
'ENSG00000259881' => null,
'ENSG00000261226' => null,
'ENSMUSG00000006362' => 'core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)',
'ENSMUSG00000069867' => 'poly(A)binding protein nuclear 1-like',
'ENSMUSG00000085917' => 'predicted gene 15899',
'ENSMUSG00000090174' => 'predicted gene 10612',
'ENSMUSG00000098500' => 'microRNA 6396'
)
$gene_name_arr = array(
'ENSDARG00000079012' => 'CBFA2T3',
'ENSDARG00000087996' => 'pabpn1l',
'ENSG00000129993' => 'CBFA2T3',
'ENSG00000205018' => 'RP11-830F9.6',
'ENSG00000205022' => 'PABPN1L',
'ENSG00000259881' => 'RP11-830F9.5',
'ENSG00000261226' => 'RP11-830F9.7',
'ENSMUSG00000006362' => 'Cbfa2t3',
'ENSMUSG00000069867' => 'Pabpn1l',
'ENSMUSG00000085917' => 'Gm15899',
'ENSMUSG00000090174' => 'Gm10612',
'ENSMUSG00000098500' => 'Mir6396'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0006AK_0001',
'tax_id' => '7955',
'chromosome' => '7',
'seq_start' => '56900155',
'seq_end' => '56938884',
'region_length' => '38729',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000087996-ENSDARG00000079012'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0006AK_0002',
'tax_id' => '9606',
'chromosome' => '16',
'seq_start' => '88863333',
'seq_end' => '88977204',
'region_length' => '113871',
'region_type' => 'CGP',
'el_id' => 'ENSG00000205022-ENSG00000129993'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0006AK_0003',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '122619471',
'seq_end' => '122699109',
'region_length' => '79638',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000069867-ENSMUSG00000006362'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 4 => 'Adrenal',
(int) 9 => 'Bladder',
(int) 11 => 'Brain',
(int) 21 => 'Breast',
(int) 26 => 'Colon',
(int) 33 => 'Heart',
(int) 42 => 'Kidney',
(int) 47 => 'Liver',
(int) 59 => 'Lung',
(int) 65 => 'Muscle',
(int) 72 => 'Ovary',
(int) 82 => 'Placenta',
(int) 88 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 37
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENSDART00000021009' => array(
'start' => '56923526',
'end' => '56938884',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-201'
),
'ENSDART00000125275' => array(
'start' => '56900155',
'end' => '56910332',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pabpn1l-201'
),
'ENSDART00000131923' => array(
'start' => '56900642',
'end' => '56911722',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pabpn1l-001'
),
'ENSDART00000135304' => array(
'start' => '56900882',
'end' => '56911657',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pabpn1l-003'
),
'ENSDART00000147792' => array(
'start' => '56900943',
'end' => '56911599',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pabpn1l-002'
),
'ENST00000268679' => array(
'start' => '88874858',
'end' => '88977204',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-001'
),
'ENST00000327483' => array(
'start' => '88874858',
'end' => '88941198',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-002'
),
'ENST00000562719' => array(
'start' => '88892285',
'end' => '88902515',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-008'
),
'ENST00000563640' => array(
'start' => '88892399',
'end' => '88977080',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-009'
),
'ENST00000563856' => array(
'start' => '88875525',
'end' => '88881157',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CBFA2T3-004'
),
'ENST00000563920' => array(
'start' => '88876228',
'end' => '88880036',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CBFA2T3-005'
),
'ENST00000564416' => array(
'start' => '88898088',
'end' => '88941200',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-011'
),
'ENST00000566868' => array(
'start' => '88879430',
'end' => '88881313',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'CBFA2T3-007'
),
'ENST00000569443' => array(
'start' => '88892244',
'end' => '88941844',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-010'
),
'ENST00000569464' => array(
'start' => '88881112',
'end' => '88941809',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-006'
),
'ENST00000570046' => array(
'start' => '88901558',
'end' => '88957775',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-012'
),
'ENST00000378347' => array(
'start' => '88939789',
'end' => '88951524',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-830F9.6-001'
),
'ENST00000411789' => array(
'start' => '88863686',
'end' => '88866660',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PABPN1L-003'
),
'ENST00000419291' => array(
'start' => '88863333',
'end' => '88866618',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PABPN1L-001'
),
'ENST00000547152' => array(
'start' => '88863686',
'end' => '88866660',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PABPN1L-002'
),
'ENST00000562405' => array(
'start' => '88881038',
'end' => '88883919',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-830F9.5-001'
),
'ENST00000562574' => array(
'start' => '88881257',
'end' => '88883715',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-830F9.5-002'
),
'ENST00000565053' => array(
'start' => '88883272',
'end' => '88887136',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-830F9.5-004'
),
'ENST00000569249' => array(
'start' => '88881455',
'end' => '88883926',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-830F9.5-003'
),
'ENST00000561980' => array(
'start' => '88936779',
'end' => '88937756',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-830F9.7-002'
),
'ENST00000564646' => array(
'start' => '88936779',
'end' => '88939651',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-830F9.7-001'
),
'ENSMUST00000006525' => array(
'start' => '122629463',
'end' => '122678072',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cbfa2t3-003'
),
'ENSMUST00000064674' => array(
'start' => '122629938',
'end' => '122678175',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cbfa2t3-002'
),
'ENSMUST00000127984' => array(
'start' => '122628739',
'end' => '122699109',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cbfa2t3-001'
),
'ENSMUST00000134045' => array(
'start' => '122639014',
'end' => '122678694',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cbfa2t3-005'
),
'ENSMUST00000142535' => array(
'start' => '122639018',
'end' => '122646466',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Cbfa2t3-007'
),
'ENSMUST00000147374' => array(
'start' => '122643004',
'end' => '122678111',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Cbfa2t3-006'
),
'ENSMUST00000148630' => array(
'start' => '122650028',
'end' => '122698902',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Cbfa2t3-004'
),
'ENSMUST00000093059' => array(
'start' => '122619471',
'end' => '122622739',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pabpn1l-001'
),
'ENSMUST00000128586' => array(
'start' => '122683602',
'end' => '122683839',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm15899-001'
),
'ENSMUST00000162198' => array(
'start' => '122697860',
'end' => '122700160',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm10612-001'
),
'ENSMUST00000183603' => array(
'start' => '122622265',
'end' => '122622375',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir6396-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0006AK_0001' => array(
'genes_in_region' => array(
'ENSDARG00000079012' => array(
[maximum depth reached]
),
'ENSDARG00000087996' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Liver',
(int) 3 => 'Muscle',
(int) 4 => 'Brain',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Muscle',
(int) 9 => 'Kidney',
(int) 10 => 'Liver',
(int) 11 => 'Liver'
)
),
'CIL_0006AK_0002' => array(
'genes_in_region' => array(
'ENSG00000129993' => array(
[maximum depth reached]
),
'ENSG00000205018' => array(
[maximum depth reached]
),
'ENSG00000205022' => array(
[maximum depth reached]
),
'ENSG00000261226' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Colon',
(int) 1 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 3 => 'Brain',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Lung',
(int) 7 => 'Muscle',
(int) 8 => 'Ovary',
(int) 9 => 'Testis',
(int) 10 => 'Liver',
(int) 11 => 'Liver',
(int) 12 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Colon',
(int) 18 => 'Heart',
(int) 19 => 'Kidney',
(int) 20 => 'Liver',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Brain',
(int) 27 => 'Breast',
(int) 28 => 'Colon',
(int) 29 => 'Liver',
(int) 30 => 'Lung',
(int) 31 => 'Muscle',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Testis',
(int) 35 => 'Ovary',
(int) 36 => 'Heart',
(int) 37 => 'Placenta',
(int) 38 => 'Adipose',
(int) 39 => 'Adrenal',
(int) 40 => 'Brain',
(int) 41 => 'Breast',
(int) 42 => 'Colon',
(int) 43 => 'Heart',
(int) 44 => 'Kidney',
(int) 45 => 'Liver',
(int) 46 => 'Lung',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Ovary',
(int) 51 => 'Adrenal',
(int) 52 => 'Brain',
(int) 53 => 'Heart',
(int) 54 => 'Ovary',
(int) 55 => 'Testis',
(int) 56 => 'Liver',
(int) 57 => 'Brain',
(int) 58 => 'Muscle',
(int) 59 => 'Colon',
(int) 60 => 'Liver',
(int) 61 => 'Ovary',
(int) 62 => 'Bladder',
(int) 63 => 'Brain',
(int) 64 => 'Breast',
(int) 65 => 'Heart',
(int) 66 => 'Lung',
(int) 67 => 'Muscle',
(int) 68 => 'Ovary',
(int) 69 => 'Placenta',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Adrenal',
(int) 73 => 'Brain',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Heart',
(int) 77 => 'Kidney',
(int) 78 => 'Liver',
(int) 79 => 'Lung',
(int) 80 => 'Ovary',
(int) 81 => 'Placenta',
(int) 82 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0006AK_0003',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '122619471',
'seq_end' => '122699109',
'region_length' => '79638',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000069867-ENSMUSG00000006362'
)
)
$gene_el = array(
'ENST00000561980' => array(
'Bladder' => array(
'average_FPKM' => '0.415',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.047',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.050',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.055',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.217',
'stddev_FPKM' => '0.03'
),
'Muscle' => array(
'average_FPKM' => '1.215',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.077',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.166',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '1.119',
'stddev_FPKM' => '0.50'
)
),
'ENST00000564646' => array(
'Adipose' => array(
'average_FPKM' => '0.053',
'stddev_FPKM' => '0.00'
),
'Adrenal' => array(
'average_FPKM' => '0.122',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.048',
'stddev_FPKM' => '0.02'
),
'Breast' => array(
'average_FPKM' => '0.071',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.164',
'stddev_FPKM' => '0.12'
),
'Heart' => array(
'average_FPKM' => '0.039',
'stddev_FPKM' => '0.03'
),
'Kidney' => array(
'average_FPKM' => '0.010',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.028',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.011',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.028',
'stddev_FPKM' => '0.01'
),
'Placenta' => array(
'average_FPKM' => '0.024',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.213',
'stddev_FPKM' => '0.01'
)
)
)
$gene_key = 'ENSG00000261226'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.053',
'stddev_FPKM' => '0.00'
),
'Adrenal' => array(
'average_FPKM' => '0.122',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.048',
'stddev_FPKM' => '0.02'
),
'Breast' => array(
'average_FPKM' => '0.071',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.164',
'stddev_FPKM' => '0.12'
),
'Heart' => array(
'average_FPKM' => '0.039',
'stddev_FPKM' => '0.03'
),
'Kidney' => array(
'average_FPKM' => '0.010',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.028',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.011',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.028',
'stddev_FPKM' => '0.01'
),
'Placenta' => array(
'average_FPKM' => '0.024',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.213',
'stddev_FPKM' => '0.01'
)
)
$tran_key = 'ENST00000564646'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0006AK_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0006AK_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSDARG00000079012' => 'core-binding factor, runt domain, alpha subunit 2; translocated to, 3',
'ENSDARG00000087996' => 'poly(A) binding protein, nuclear 1, like',
'ENSG00000129993' => 'core-binding factor, runt domain, alpha subunit 2; translocated to, 3',
'ENSG00000205018' => null,
'ENSG00000205022' => 'poly(A) binding protein, nuclear 1-like (cytoplasmic)',
'ENSG00000259881' => null,
'ENSG00000261226' => null,
'ENSMUSG00000006362' => 'core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)',
'ENSMUSG00000069867' => 'poly(A)binding protein nuclear 1-like',
'ENSMUSG00000085917' => 'predicted gene 15899',
'ENSMUSG00000090174' => 'predicted gene 10612',
'ENSMUSG00000098500' => 'microRNA 6396'
),
'gene_name_arr' => array(
'ENSDARG00000079012' => 'CBFA2T3',
'ENSDARG00000087996' => 'pabpn1l',
'ENSG00000129993' => 'CBFA2T3',
'ENSG00000205018' => 'RP11-830F9.6',
'ENSG00000205022' => 'PABPN1L',
'ENSG00000259881' => 'RP11-830F9.5',
'ENSG00000261226' => 'RP11-830F9.7',
'ENSMUSG00000006362' => 'Cbfa2t3',
'ENSMUSG00000069867' => 'Pabpn1l',
'ENSMUSG00000085917' => 'Gm15899',
'ENSMUSG00000090174' => 'Gm10612',
'ENSMUSG00000098500' => 'Mir6396'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 4 => 'Adrenal',
(int) 9 => 'Bladder',
(int) 11 => 'Brain',
(int) 21 => 'Breast',
(int) 26 => 'Colon',
(int) 33 => 'Heart',
(int) 42 => 'Kidney',
(int) 47 => 'Liver',
(int) 59 => 'Lung',
(int) 65 => 'Muscle',
(int) 72 => 'Ovary',
(int) 82 => 'Placenta',
(int) 88 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 37,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENSDART00000021009' => array(
'start' => '56923526',
'end' => '56938884',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-201'
),
'ENSDART00000125275' => array(
'start' => '56900155',
'end' => '56910332',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pabpn1l-201'
),
'ENSDART00000131923' => array(
'start' => '56900642',
'end' => '56911722',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pabpn1l-001'
),
'ENSDART00000135304' => array(
'start' => '56900882',
'end' => '56911657',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pabpn1l-003'
),
'ENSDART00000147792' => array(
'start' => '56900943',
'end' => '56911599',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pabpn1l-002'
),
'ENST00000268679' => array(
'start' => '88874858',
'end' => '88977204',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-001'
),
'ENST00000327483' => array(
'start' => '88874858',
'end' => '88941198',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-002'
),
'ENST00000562719' => array(
'start' => '88892285',
'end' => '88902515',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-008'
),
'ENST00000563640' => array(
'start' => '88892399',
'end' => '88977080',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-009'
),
'ENST00000563856' => array(
'start' => '88875525',
'end' => '88881157',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CBFA2T3-004'
),
'ENST00000563920' => array(
'start' => '88876228',
'end' => '88880036',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CBFA2T3-005'
),
'ENST00000564416' => array(
'start' => '88898088',
'end' => '88941200',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-011'
),
'ENST00000566868' => array(
'start' => '88879430',
'end' => '88881313',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'CBFA2T3-007'
),
'ENST00000569443' => array(
'start' => '88892244',
'end' => '88941844',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-010'
),
'ENST00000569464' => array(
'start' => '88881112',
'end' => '88941809',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-006'
),
'ENST00000570046' => array(
'start' => '88901558',
'end' => '88957775',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-012'
),
'ENST00000378347' => array(
'start' => '88939789',
'end' => '88951524',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-830F9.6-001'
),
'ENST00000411789' => array(
'start' => '88863686',
'end' => '88866660',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PABPN1L-003'
),
'ENST00000419291' => array(
'start' => '88863333',
'end' => '88866618',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PABPN1L-001'
),
'ENST00000547152' => array(
'start' => '88863686',
'end' => '88866660',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PABPN1L-002'
),
'ENST00000562405' => array(
'start' => '88881038',
'end' => '88883919',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-830F9.5-001'
),
'ENST00000562574' => array(
'start' => '88881257',
'end' => '88883715',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-830F9.5-002'
),
'ENST00000565053' => array(
'start' => '88883272',
'end' => '88887136',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-830F9.5-004'
),
'ENST00000569249' => array(
'start' => '88881455',
'end' => '88883926',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-830F9.5-003'
),
'ENST00000561980' => array(
'start' => '88936779',
'end' => '88937756',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-830F9.7-002'
),
'ENST00000564646' => array(
'start' => '88936779',
'end' => '88939651',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-830F9.7-001'
),
'ENSMUST00000006525' => array(
'start' => '122629463',
'end' => '122678072',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cbfa2t3-003'
),
'ENSMUST00000064674' => array(
'start' => '122629938',
'end' => '122678175',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cbfa2t3-002'
),
'ENSMUST00000127984' => array(
'start' => '122628739',
'end' => '122699109',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cbfa2t3-001'
),
'ENSMUST00000134045' => array(
'start' => '122639014',
'end' => '122678694',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cbfa2t3-005'
),
'ENSMUST00000142535' => array(
'start' => '122639018',
'end' => '122646466',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Cbfa2t3-007'
),
'ENSMUST00000147374' => array(
'start' => '122643004',
'end' => '122678111',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Cbfa2t3-006'
),
'ENSMUST00000148630' => array(
'start' => '122650028',
'end' => '122698902',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Cbfa2t3-004'
),
'ENSMUST00000093059' => array(
'start' => '122619471',
'end' => '122622739',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pabpn1l-001'
),
'ENSMUST00000128586' => array(
'start' => '122683602',
'end' => '122683839',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm15899-001'
),
'ENSMUST00000162198' => array(
'start' => '122697860',
'end' => '122700160',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm10612-001'
),
'ENSMUST00000183603' => array(
'start' => '122622265',
'end' => '122622375',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir6396-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0006AK_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0006AK_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0006AK_0001' => array(
'genes_in_region' => array(
'ENSDARG00000079012' => array(
[maximum depth reached]
),
'ENSDARG00000087996' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Liver',
(int) 3 => 'Muscle',
(int) 4 => 'Brain',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Muscle',
(int) 9 => 'Kidney',
(int) 10 => 'Liver',
(int) 11 => 'Liver'
)
),
'CIL_0006AK_0002' => array(
'genes_in_region' => array(
'ENSG00000129993' => array(
[maximum depth reached]
),
'ENSG00000205018' => array(
[maximum depth reached]
),
'ENSG00000205022' => array(
[maximum depth reached]
),
'ENSG00000261226' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Colon',
(int) 1 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 3 => 'Brain',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Lung',
(int) 7 => 'Muscle',
(int) 8 => 'Ovary',
(int) 9 => 'Testis',
(int) 10 => 'Liver',
(int) 11 => 'Liver',
(int) 12 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Colon',
(int) 18 => 'Heart',
(int) 19 => 'Kidney',
(int) 20 => 'Liver',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Brain',
(int) 27 => 'Breast',
(int) 28 => 'Colon',
(int) 29 => 'Liver',
(int) 30 => 'Lung',
(int) 31 => 'Muscle',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Testis',
(int) 35 => 'Ovary',
(int) 36 => 'Heart',
(int) 37 => 'Placenta',
(int) 38 => 'Adipose',
(int) 39 => 'Adrenal',
(int) 40 => 'Brain',
(int) 41 => 'Breast',
(int) 42 => 'Colon',
(int) 43 => 'Heart',
(int) 44 => 'Kidney',
(int) 45 => 'Liver',
(int) 46 => 'Lung',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Ovary',
(int) 51 => 'Adrenal',
(int) 52 => 'Brain',
(int) 53 => 'Heart',
(int) 54 => 'Ovary',
(int) 55 => 'Testis',
(int) 56 => 'Liver',
(int) 57 => 'Brain',
(int) 58 => 'Muscle',
(int) 59 => 'Colon',
(int) 60 => 'Liver',
(int) 61 => 'Ovary',
(int) 62 => 'Bladder',
(int) 63 => 'Brain',
(int) 64 => 'Breast',
(int) 65 => 'Heart',
(int) 66 => 'Lung',
(int) 67 => 'Muscle',
(int) 68 => 'Ovary',
(int) 69 => 'Placenta',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Adrenal',
(int) 73 => 'Brain',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Heart',
(int) 77 => 'Kidney',
(int) 78 => 'Liver',
(int) 79 => 'Lung',
(int) 80 => 'Ovary',
(int) 81 => 'Placenta',
(int) 82 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSDARG00000079012' => 'core-binding factor, runt domain, alpha subunit 2; translocated to, 3',
'ENSDARG00000087996' => 'poly(A) binding protein, nuclear 1, like',
'ENSG00000129993' => 'core-binding factor, runt domain, alpha subunit 2; translocated to, 3',
'ENSG00000205018' => null,
'ENSG00000205022' => 'poly(A) binding protein, nuclear 1-like (cytoplasmic)',
'ENSG00000259881' => null,
'ENSG00000261226' => null,
'ENSMUSG00000006362' => 'core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)',
'ENSMUSG00000069867' => 'poly(A)binding protein nuclear 1-like',
'ENSMUSG00000085917' => 'predicted gene 15899',
'ENSMUSG00000090174' => 'predicted gene 10612',
'ENSMUSG00000098500' => 'microRNA 6396'
)
$gene_name_arr = array(
'ENSDARG00000079012' => 'CBFA2T3',
'ENSDARG00000087996' => 'pabpn1l',
'ENSG00000129993' => 'CBFA2T3',
'ENSG00000205018' => 'RP11-830F9.6',
'ENSG00000205022' => 'PABPN1L',
'ENSG00000259881' => 'RP11-830F9.5',
'ENSG00000261226' => 'RP11-830F9.7',
'ENSMUSG00000006362' => 'Cbfa2t3',
'ENSMUSG00000069867' => 'Pabpn1l',
'ENSMUSG00000085917' => 'Gm15899',
'ENSMUSG00000090174' => 'Gm10612',
'ENSMUSG00000098500' => 'Mir6396'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0006AK_0001',
'tax_id' => '7955',
'chromosome' => '7',
'seq_start' => '56900155',
'seq_end' => '56938884',
'region_length' => '38729',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000087996-ENSDARG00000079012'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0006AK_0002',
'tax_id' => '9606',
'chromosome' => '16',
'seq_start' => '88863333',
'seq_end' => '88977204',
'region_length' => '113871',
'region_type' => 'CGP',
'el_id' => 'ENSG00000205022-ENSG00000129993'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0006AK_0003',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '122619471',
'seq_end' => '122699109',
'region_length' => '79638',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000069867-ENSMUSG00000006362'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 4 => 'Adrenal',
(int) 9 => 'Bladder',
(int) 11 => 'Brain',
(int) 21 => 'Breast',
(int) 26 => 'Colon',
(int) 33 => 'Heart',
(int) 42 => 'Kidney',
(int) 47 => 'Liver',
(int) 59 => 'Lung',
(int) 65 => 'Muscle',
(int) 72 => 'Ovary',
(int) 82 => 'Placenta',
(int) 88 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 37
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENSDART00000021009' => array(
'start' => '56923526',
'end' => '56938884',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-201'
),
'ENSDART00000125275' => array(
'start' => '56900155',
'end' => '56910332',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pabpn1l-201'
),
'ENSDART00000131923' => array(
'start' => '56900642',
'end' => '56911722',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pabpn1l-001'
),
'ENSDART00000135304' => array(
'start' => '56900882',
'end' => '56911657',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pabpn1l-003'
),
'ENSDART00000147792' => array(
'start' => '56900943',
'end' => '56911599',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'pabpn1l-002'
),
'ENST00000268679' => array(
'start' => '88874858',
'end' => '88977204',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-001'
),
'ENST00000327483' => array(
'start' => '88874858',
'end' => '88941198',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-002'
),
'ENST00000562719' => array(
'start' => '88892285',
'end' => '88902515',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-008'
),
'ENST00000563640' => array(
'start' => '88892399',
'end' => '88977080',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-009'
),
'ENST00000563856' => array(
'start' => '88875525',
'end' => '88881157',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CBFA2T3-004'
),
'ENST00000563920' => array(
'start' => '88876228',
'end' => '88880036',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CBFA2T3-005'
),
'ENST00000564416' => array(
'start' => '88898088',
'end' => '88941200',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-011'
),
'ENST00000566868' => array(
'start' => '88879430',
'end' => '88881313',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'CBFA2T3-007'
),
'ENST00000569443' => array(
'start' => '88892244',
'end' => '88941844',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-010'
),
'ENST00000569464' => array(
'start' => '88881112',
'end' => '88941809',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-006'
),
'ENST00000570046' => array(
'start' => '88901558',
'end' => '88957775',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CBFA2T3-012'
),
'ENST00000378347' => array(
'start' => '88939789',
'end' => '88951524',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-830F9.6-001'
),
'ENST00000411789' => array(
'start' => '88863686',
'end' => '88866660',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PABPN1L-003'
),
'ENST00000419291' => array(
'start' => '88863333',
'end' => '88866618',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PABPN1L-001'
),
'ENST00000547152' => array(
'start' => '88863686',
'end' => '88866660',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PABPN1L-002'
),
'ENST00000562405' => array(
'start' => '88881038',
'end' => '88883919',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-830F9.5-001'
),
'ENST00000562574' => array(
'start' => '88881257',
'end' => '88883715',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-830F9.5-002'
),
'ENST00000565053' => array(
'start' => '88883272',
'end' => '88887136',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-830F9.5-004'
),
'ENST00000569249' => array(
'start' => '88881455',
'end' => '88883926',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-830F9.5-003'
),
'ENST00000561980' => array(
'start' => '88936779',
'end' => '88937756',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-830F9.7-002'
),
'ENST00000564646' => array(
'start' => '88936779',
'end' => '88939651',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-830F9.7-001'
),
'ENSMUST00000006525' => array(
'start' => '122629463',
'end' => '122678072',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cbfa2t3-003'
),
'ENSMUST00000064674' => array(
'start' => '122629938',
'end' => '122678175',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cbfa2t3-002'
),
'ENSMUST00000127984' => array(
'start' => '122628739',
'end' => '122699109',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cbfa2t3-001'
),
'ENSMUST00000134045' => array(
'start' => '122639014',
'end' => '122678694',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cbfa2t3-005'
),
'ENSMUST00000142535' => array(
'start' => '122639018',
'end' => '122646466',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Cbfa2t3-007'
),
'ENSMUST00000147374' => array(
'start' => '122643004',
'end' => '122678111',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Cbfa2t3-006'
),
'ENSMUST00000148630' => array(
'start' => '122650028',
'end' => '122698902',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Cbfa2t3-004'
),
'ENSMUST00000093059' => array(
'start' => '122619471',
'end' => '122622739',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pabpn1l-001'
),
'ENSMUST00000128586' => array(
'start' => '122683602',
'end' => '122683839',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm15899-001'
),
'ENSMUST00000162198' => array(
'start' => '122697860',
'end' => '122700160',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm10612-001'
),
'ENSMUST00000183603' => array(
'start' => '122622265',
'end' => '122622375',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir6396-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0006AK_0001' => array(
'genes_in_region' => array(
'ENSDARG00000079012' => array(
[maximum depth reached]
),
'ENSDARG00000087996' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Liver',
(int) 3 => 'Muscle',
(int) 4 => 'Brain',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Muscle',
(int) 9 => 'Kidney',
(int) 10 => 'Liver',
(int) 11 => 'Liver'
)
),
'CIL_0006AK_0002' => array(
'genes_in_region' => array(
'ENSG00000129993' => array(
[maximum depth reached]
),
'ENSG00000205018' => array(
[maximum depth reached]
),
'ENSG00000205022' => array(
[maximum depth reached]
),
'ENSG00000261226' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Colon',
(int) 1 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 3 => 'Brain',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Lung',
(int) 7 => 'Muscle',
(int) 8 => 'Ovary',
(int) 9 => 'Testis',
(int) 10 => 'Liver',
(int) 11 => 'Liver',
(int) 12 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Colon',
(int) 18 => 'Heart',
(int) 19 => 'Kidney',
(int) 20 => 'Liver',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Brain',
(int) 27 => 'Breast',
(int) 28 => 'Colon',
(int) 29 => 'Liver',
(int) 30 => 'Lung',
(int) 31 => 'Muscle',
(int) 32 => 'Ovary',
(int) 33 => 'Placenta',
(int) 34 => 'Testis',
(int) 35 => 'Ovary',
(int) 36 => 'Heart',
(int) 37 => 'Placenta',
(int) 38 => 'Adipose',
(int) 39 => 'Adrenal',
(int) 40 => 'Brain',
(int) 41 => 'Breast',
(int) 42 => 'Colon',
(int) 43 => 'Heart',
(int) 44 => 'Kidney',
(int) 45 => 'Liver',
(int) 46 => 'Lung',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Ovary',
(int) 51 => 'Adrenal',
(int) 52 => 'Brain',
(int) 53 => 'Heart',
(int) 54 => 'Ovary',
(int) 55 => 'Testis',
(int) 56 => 'Liver',
(int) 57 => 'Brain',
(int) 58 => 'Muscle',
(int) 59 => 'Colon',
(int) 60 => 'Liver',
(int) 61 => 'Ovary',
(int) 62 => 'Bladder',
(int) 63 => 'Brain',
(int) 64 => 'Breast',
(int) 65 => 'Heart',
(int) 66 => 'Lung',
(int) 67 => 'Muscle',
(int) 68 => 'Ovary',
(int) 69 => 'Placenta',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Adrenal',
(int) 73 => 'Brain',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Heart',
(int) 77 => 'Kidney',
(int) 78 => 'Liver',
(int) 79 => 'Lung',
(int) 80 => 'Ovary',
(int) 81 => 'Placenta',
(int) 82 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0006AK_0003',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '122619471',
'seq_end' => '122699109',
'region_length' => '79638',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000069867-ENSMUSG00000006362'
)
)
$gene_el = array(
'ENST00000561980' => array(
'Bladder' => array(
'average_FPKM' => '0.415',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.047',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.050',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.055',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.217',
'stddev_FPKM' => '0.03'
),
'Muscle' => array(
'average_FPKM' => '1.215',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.077',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.166',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '1.119',
'stddev_FPKM' => '0.50'
)
),
'ENST00000564646' => array(
'Adipose' => array(
'average_FPKM' => '0.053',
'stddev_FPKM' => '0.00'
),
'Adrenal' => array(
'average_FPKM' => '0.122',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.048',
'stddev_FPKM' => '0.02'
),
'Breast' => array(
'average_FPKM' => '0.071',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.164',
'stddev_FPKM' => '0.12'
),
'Heart' => array(
'average_FPKM' => '0.039',
'stddev_FPKM' => '0.03'
),
'Kidney' => array(
'average_FPKM' => '0.010',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.028',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.011',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.028',
'stddev_FPKM' => '0.01'
),
'Placenta' => array(
'average_FPKM' => '0.024',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.213',
'stddev_FPKM' => '0.01'
)
)
)
$gene_key = 'ENSG00000261226'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.053',
'stddev_FPKM' => '0.00'
),
'Adrenal' => array(
'average_FPKM' => '0.122',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.048',
'stddev_FPKM' => '0.02'
),
'Breast' => array(
'average_FPKM' => '0.071',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '0.164',
'stddev_FPKM' => '0.12'
),
'Heart' => array(
'average_FPKM' => '0.039',
'stddev_FPKM' => '0.03'
),
'Kidney' => array(
'average_FPKM' => '0.010',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.028',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '0.011',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.028',
'stddev_FPKM' => '0.01'
),
'Placenta' => array(
'average_FPKM' => '0.024',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.213',
'stddev_FPKM' => '0.01'
)
)
$tran_key = 'ENST00000564646'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(CBFA2T3)