C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein SA pseudogene 58
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000496398 RPSAP58-001 ENSG00000205246 9606 + 19:23763014-23828135 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonLungMuscleOvaryPlacentaENST00000496398
Transcript ID Brain Colon Lung Muscle Ovary Placenta
ENST00000496398 2.178±0.00 0.378±0.00 2.883±0.00 0.042±0.00 0.709±0.08 0.445±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000028 IBA ribosomal small subunit assembly
GO:0000447 IBA endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000461 IBA endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003735 IBA:IEA structural constituent of ribosome
GO:0005055 IEA laminin receptor activity
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005840 IEA ribosome
GO:0005886 IEA plasma membrane
GO:0006407 IBA rRNA export from nucleus
GO:0006412 IBA:IEA translation
GO:0007155 IEA cell adhesion
GO:0015935 IEA small ribosomal subunit
GO:0022627 IBA cytosolic small ribosomal subunit
GO:0030686 IBA 90S preribosome
GO:0043236 IEA laminin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057740 Rpsa-ps10-201 protein_coding Mus_musculus 0 1208
ENSMUST00000035105 Rpsa-201 protein_coding Mus_musculus 0 1190
ENSMUST00000120702 Rpsa-ps9-001 processed_pseudogene Mus_musculus 0 1066
ENSMUST00000121691 Rpsa-ps4-001 processed_pseudogene Mus_musculus 0 1046
ENSMUST00000120596 Rpsa-ps12-001 processed_pseudogene Mus_musculus 0 1005
ENSMUST00000191040 Rpsa-ps1-001 processed_pseudogene Mus_musculus 0 979
ENSMUST00000118446 Rpsa-ps11-001 processed_pseudogene Mus_musculus 0 979
ENSMUST00000120191 Gm11824-001 processed_pseudogene Mus_musculus 0 968
ENSMUST00000120423 Gm9083-001 processed_pseudogene Mus_musculus 0 928
ENSMUST00000118817 Gm5764-001 processed_pseudogene Mus_musculus 0 774
ENSMUST00000186198 RP23-2I19.1-001 processed_pseudogene Mus_musculus 0 728
ENSDART00000135945 rpsa-001 protein_coding Danio_rerio 0 664
ENSMUST00000059546 Rpsa-ps2-201 processed_pseudogene Mus_musculus 0 645

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