| Transcript ID | Muscle | Ovary | Placenta |
|---|---|---|---|
| ENST00000354585 | 0.618±0.00 | 1.497±0.78 | 1.450±0.00 |
C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | ribosomal protein SA pseudogene 58 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000354585  |
RPSAP58-201 |
ENSG00000205246 |
9606 | + |
19:23827127-23828115  |
protein_coding |
Expression Patterns
|
Conserved Regions |
|---|
| Gene is not located within a conserved region. |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000028 | IBA | ribosomal small subunit assembly |
| GO:0000447 | IBA | endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
| GO:0000461 | IBA | endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
| GO:0003735 | IBA:IEA | structural constituent of ribosome |
| GO:0005055 | IEA | laminin receptor activity |
| GO:0005622 | IEA | intracellular |
| GO:0005634 | IEA | nucleus |
| GO:0005840 | IEA | ribosome |
| GO:0005886 | IEA | plasma membrane |
| GO:0006407 | IBA | rRNA export from nucleus |
| GO:0006412 | IBA:IEA | translation |
| GO:0007155 | IEA | cell adhesion |
| GO:0015935 | IEA | small ribosomal subunit |
| GO:0022627 | IBA | cytosolic small ribosomal subunit |
| GO:0030686 | IBA | 90S preribosome |
| GO:0043236 | IEA | laminin binding |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000057740
|
Rpsa-ps10-201 | protein_coding | Mus_musculus | 0 | 1158 |
|
ENSMUST00000035105
|
Rpsa-201 | protein_coding | Mus_musculus | 0 | 1147 |
|
ENSMUST00000120702
|
Rpsa-ps9-001 | processed_pseudogene | Mus_musculus | 0 | 1066 |
|
ENSMUST00000121691
|
Rpsa-ps4-001 | processed_pseudogene | Mus_musculus | 0 | 1046 |
|
ENSMUST00000120596
|
Rpsa-ps12-001 | processed_pseudogene | Mus_musculus | 0 | 1005 |
|
ENSMUST00000191040
|
Rpsa-ps1-001 | processed_pseudogene | Mus_musculus | 0 | 979 |
|
ENSMUST00000118446
|
Rpsa-ps11-001 | processed_pseudogene | Mus_musculus | 0 | 979 |
|
ENSMUST00000120191
|
Gm11824-001 | processed_pseudogene | Mus_musculus | 0 | 968 |
|
ENSMUST00000120423
|
Gm9083-001 | processed_pseudogene | Mus_musculus | 0 | 928 |
|
ENSMUST00000118817
|
Gm5764-001 | processed_pseudogene | Mus_musculus | 0 | 774 |
|
ENSMUST00000186198
|
RP23-2I19.1-001 | processed_pseudogene | Mus_musculus | 0 | 728 |
|
ENSDART00000135945
|
rpsa-001 | protein_coding | Danio_rerio | 0 | 664 |
|
ENSMUST00000059546
|
Rpsa-ps2-201 | processed_pseudogene | Mus_musculus | 0 | 645 |
