C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: D4, zinc and double PHD fingers, family 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000205683 DPF3 9606 - 14:72619296-72894116 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000366353 DPF3-005 72661876-72892649 nonsense_mediated_decay
  ENST00000381216 DPF3-002 72661876-72894101 nonsense_mediated_decay
  ENST00000541685 DPF3-201 72661043-72894116 protein_coding
  ENST00000546183 DPF3-001 72670853-72894101 protein_coding
  ENST00000553608 DPF3-014 72723632-72742711 processed_transcript
  ENST00000554594 DPF3-013 72674022-72714504 processed_transcript
  ENST00000555469 DPF3-008 72806010-72836483 processed_transcript
  ENST00000555781 DPF3-009 72723632-72731667 processed_transcript
  ENST00000556238 DPF3-010 72671311-72723771 processed_transcript
  ENST00000556509 DPF3-004 72619296-72894088 protein_coding
  ENST00000556891 DPF3-011 72671000-72679302 processed_transcript
  ENST00000556902 DPF3-007 72771744-72836483 processed_transcript
  ENST00000556997 DPF3-012 72671311-72675771 processed_transcript
  ENST00000557704 DPF3-006 72661049-72724105 processed_transcript
  ENST00000610283 DPF3-202 72661043-72892649 protein_coding
  ENST00000614862 DPF3-203 72661043-72894116 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000366353ENST00000381216ENST00000541685ENST00000546183ENST00000554594ENST00000555781ENST00000556238ENST00000556509ENST00000557704
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000366353 N/A N/A N/A N/A N/A N/A 0.369±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000381216 0.025±0.00 0.161±0.00 0.871±0.00 0.746±0.00 0.075±0.00 N/A 1.226±0.00 0.418±0.00 0.125±0.02 0.111±0.00 N/A 0.482±0.45 0.071±0.00 0.756±0.03
ENST00000541685 0.017±0.00 0.113±0.00 N/A 0.943±0.68 0.402±0.00 0.256±0.00 3.409±0.00 0.584±0.00 0.276±0.00 0.087±0.00 4.580±0.00 2.905±0.44 0.161±0.03 N/A
ENST00000546183 N/A N/A N/A N/A N/A 0.250±0.00 1.340±0.00 N/A N/A 0.152±0.00 N/A N/A N/A 2.440±0.00
ENST00000554594 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.227±0.00 N/A
ENST00000555781 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.320±0.00
ENST00000556238 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.971±0.00
ENST00000556509 N/A N/A N/A 1.517±0.77 N/A 1.089±0.00 N/A N/A N/A 0.040±0.00 1.984±0.00 N/A 0.292±0.00 3.596±0.00
ENST00000557704 N/A N/A N/A N/A N/A N/A N/A 0.165±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YT CIL_0008YT_0001 VISTA 14:72179551-72781734
CIL_00033C CIL_00033C_0001 CGP 14:72619296-72959703

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007399 IEA nervous system development
GO:0008150 ND biological_process
GO:0008270 NAS zinc ion binding
GO:0016568 IEA chromatin modification
GO:0046872 IEA metal ion binding
GO:0071565 ISS nBAF complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025309 dpf3 D4, zinc and double PHD fingers, family 3 protein_coding Danio_rerio
ENSMUSG00000021221 Dpf3 D4, zinc and double PHD fingers, family 3 protein_coding Mus_musculus

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