C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: D4, zinc and double PHD fingers, family 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000556509 DPF3-004 ENSG00000205683 9606 - 14:72619296-72894088 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonLungMusclePlacentaTestisENST00000556509
Transcript ID Brain Colon Lung Muscle Placenta Testis
ENST00000556509 1.517±0.77 1.089±0.00 0.040±0.00 1.984±0.00 0.292±0.00 3.596±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YT CIL_0008YT_0001 VISTA 14:72179551-72781734
CIL_00033C CIL_00033C_0001 CGP 14:72619296-72959703

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007399 IEA nervous system development
GO:0008150 ND biological_process
GO:0008270 NAS:IEA zinc ion binding
GO:0016568 IEA chromatin modification
GO:0046872 IEA metal ion binding
GO:0071565 ISS nBAF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178756 Dpf3-203 protein_coding Mus_musculus 0 1609
ENSMUST00000147469 Dpf3-001 protein_coding Mus_musculus 0 1308
ENSMUST00000177959 Dpf3-202 protein_coding Mus_musculus 0 1208
ENSMUST00000177801 Dpf3-201 protein_coding Mus_musculus 0 976
ENSMUST00000144237 Dpf3-002 protein_coding Mus_musculus 0 928
ENSMUST00000133282 Dpf3-003 protein_coding Mus_musculus 0 907
ENSMUST00000140327 Dpf3-004 protein_coding Mus_musculus 0 296
ENSDART00000123387 dpf3-201 protein_coding Danio_rerio 0 222
ENSMUST00000065181 Dpf1-005 protein_coding Mus_musculus 1.00053e-42 178
ENSMUST00000138993 Dpf1-006 retained_intron Mus_musculus 1.00053e-42 178
ENSMUST00000108230 Dpf1-003 protein_coding Mus_musculus 1.00053e-42 178
ENSMUST00000049977 Dpf1-001 protein_coding Mus_musculus 3.99931e-42 176
ENSMUST00000108231 Dpf1-002 protein_coding Mus_musculus 3.99931e-42 176
ENSMUST00000154222 Dpf1-004 processed_transcript Mus_musculus 2e-40 171
ENSMUST00000137848 Dpf1-007 protein_coding Mus_musculus 3e-19 100

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