C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S29
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000213741 RPS29 9606 - 14:49570984-49599164 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000245458 RPS29-001 49583572-49586376 protein_coding
  ENST00000396020 RPS29-002 49570984-49586376 protein_coding
  ENST00000539688 RPS29-011 49597475-49599164 processed_transcript
  ENST00000554075 RPS29-005 49585298-49586358 retained_intron
  ENST00000556230 RPS29-003 49585518-49586376 retained_intron
  ENST00000557111 RPS29-010 49583579-49598690 protein_coding
  ENST00000557367 RPS29-006 49583579-49586351 retained_intron
  ENST00000557519 RPS29-008 49585390-49586325 processed_transcript
  ENST00000611563 RPS29-201 49585711-49586416 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000245458ENST00000396020ENST00000611563
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000245458 434.815±0.00 832.521±0.00 16.340±0.00 176.786±0.00 448.304±0.00 571.190±0.00 209.128±151.09 274.700±168.76 279.768±202.98 648.885±554.74 426.133±310.96 963.199±815.59 977.057±553.25 262.235±164.43
ENST00000396020 N/A N/A 0.484±0.00 1.065±0.00 N/A 2.623±0.00 0.304±0.00 1.006±0.43 0.935±0.00 0.703±0.00 N/A 0.676±0.00 N/A N/A
ENST00000611563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 193.275±0.00 78.019±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005Q4 CIL_0005Q4_0001 CGP 14:46839629-49599164
CIL_0005Q3 CIL_0005Q3_0001 CGP 14:49570984-49614672

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003735 IDA:IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IC:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0008270 IDA zinc ion binding
GO:0010467 TAS gene expression
GO:0015935 IDA small ribosomal subunit
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041232 rps29 ribosomal protein S29 protein_coding Danio_rerio
ENSMUSG00000034892 Rps29 ribosomal protein S29 protein_coding Mus_musculus
ENSMUSG00000063180 Gm10126 predicted gene 10126 protein_coding Mus_musculus

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