C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005Q3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000213741-ENSG00000165501 CGP 9606 14:49570984-49614672
GeneTranscriptPositionBiotype
ENSG00000165501 (LRR1)
leucine rich repeat protein 1 		ENST00000298288 (LRR1-001) 49598697-49614672 protein_coding
ENST00000318317 (LRR1-002) 49598761-49614670 protein_coding
ENST00000540712 (LRR1-004) 49598952-49614671 nonsense_mediated_decay
ENST00000554869 (LRR1-003) 49598775-49614671 nonsense_mediated_decay
ENST00000557531 (LRR1-005) 49600412-49607509 processed_transcript
ENSG00000213741 (RPS29)
ribosomal protein S29 		ENST00000245458 (RPS29-001) 49583572-49586376 protein_coding
ENST00000396020 (RPS29-002) 49570984-49586376 protein_coding
ENST00000539688 (RPS29-011) 49597475-49599164 processed_transcript
ENST00000554075 (RPS29-005) 49585298-49586358 retained_intron
ENST00000556230 (RPS29-003) 49585518-49586376 retained_intron
ENST00000557111 (RPS29-010) 49583579-49598690 protein_coding
ENST00000557367 (RPS29-006) 49583579-49586351 retained_intron
ENST00000557519 (RPS29-008) 49585390-49586325 processed_transcript
ENST00000611563 (RPS29-201) 49585711-49586416 protein_coding
ENSG00000244270 (RPL32P29)
ribosomal protein L32 pseudogene 29 		ENST00000497398 (RPL32P29-001) 49577392-49577794 processed_pseudogene
ENSG00000252919 (Y_RNA)
Y RNA 		ENST00000517110 (Y_RNA.1-922) 49592236-49592337 misc_RNA
ENSG00000258486 (RN7SL1)
RNA, 7SL, cytoplasmic 1 		ENST00000553637 (RN7SL1-001) 49586579-49586878 non_coding
ENSG00000276168 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000618786 (Metazoa_SRP.1-358) 49586580-49586878 misc_RNA
ENSG00000278009 (RP11-649E7.8)
 ENST00000614802 (RP11-649E7.8-001) 49601011-49601124 unprocessed_pseudogene
CIL_0005Q3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034892-ENSMUSG00000034883 CGP 10090 12:69157722-69179010
GeneTranscriptPositionBiotype
ENSMUSG00000034883 (Lrr1)
leucine rich repeat protein 1 		ENSMUST00000110621 (Lrr1-201) 69168814-69179010 protein_coding
ENSMUSG00000034892 (Rps29)
ribosomal protein S29 		ENSMUST00000037023 (Rps29-001) 69157722-69159186 protein_coding
ENSMUST00000094291 (Rps29-002) 69158358-69159054 retained_intron
ENSMUSG00000099021 (Gm22405)
predicted gene, 22405 		ENSMUST00000174924 (Gm22405-201) 69159295-69159594 misc_RNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005Q3_0001ENSG00000165501ENST00000298288ENST00000318317ENST00000540712ENST00000554869ENST00000557531ENSG00000213741ENST00000245458ENST00000396020ENST00000539688ENST00000554075ENST00000556230ENST00000557111ENST00000557367ENST00000557519ENST00000611563ENSG00000244270ENST00000497398ENSG00000252919ENST00000517110ENSG00000258486ENST00000553637ENSG00000276168ENST00000618786ENSG00000278009ENST00000614802CIL_0005Q3_0002ENSMUSG00000034883ENSMUST00000110621ENSMUSG00000034892ENSMUST00000037023ENSMUST00000094291ENSMUSG00000099021ENSMUST00000174924
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005Q3_0001ENSG00000165501ENST00000298288ENST00000318317ENST00000554869ENSG00000213741ENST00000245458ENST00000396020ENST00000611563ENSG00000244270ENST00000497398ENSG00000252919ENST00000517110ENSG00000258486ENST00000553637ENSG00000276168ENST00000618786ENSG00000278009ENST00000614802CIL_0005Q3_0002ENSMUSG00000034883ENSMUST00000110621ENSMUSG00000034892ENSMUST00000037023ENSMUSG00000099021ENSMUST00000174924
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000165501 ENST00000298288 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.921±0.00 N/A 14.243±2.63
ENST00000318317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.396±0.00
ENST00000540712 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.409±0.00
ENST00000557531 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213741 ENST00000245458 434.815±0.00 832.521±0.00 16.340±0.00 176.786±0.00 448.304±0.00 571.190±0.00 209.128±151.09 274.700±168.76 279.768±202.98 648.885±554.74 426.133±310.96 963.199±815.59 977.057±553.25 262.235±164.43
ENST00000396020 N/A N/A 0.484±0.00 1.065±0.00 N/A 2.623±0.00 0.304±0.00 1.006±0.43 0.935±0.00 0.703±0.00 N/A 0.676±0.00 N/A N/A
ENST00000539688 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556230 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557111 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557519 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 193.275±0.00 78.019±0.00 N/A
ENSG00000244270 ENST00000497398 N/A N/A N/A N/A N/A N/A N/A N/A 8.159±0.00 N/A N/A 9.239±0.00 N/A N/A
ENSG00000252919 ENST00000517110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.394±0.00 N/A 0.641±0.00
ENSG00000258486 ENST00000553637 120.068±0.00 289.052±0.00 5832.210±0.00 69.311±0.00 219.187±0.00 47.270±0.00 2616.757±2609.13 41.831±0.00 7.553±0.00 6841.430±6821.27 2.525±0.00 9053.698±9021.60 10.688±1.74 93.844±0.00
ENSG00000276168 ENST00000618786 24.804±0.00 N/A N/A N/A N/A N/A N/A 31654.301±0.00 17942.872±17935.33 5.395±0.00 5965.047±5963.05 76.416±67.43 22.237±0.00 1.889±0.00
ENSG00000278009 ENST00000614802 0.741±0.00 1.478±0.00 N/A N/A 1.032±0.00 N/A 0.229±0.00 0.249±0.00 N/A 0.913±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034883 ENSMUST00000110621 0.188±0.17 0.160±0.09 0.055±0.02 1.215±0.52 0.200±0.13 0.606±0.20 N/A 0.122±0.10 4.443±2.96 0.095±0.05 0.022±0.00 1.115±0.64 1.898±1.34 0.871±0.36
ENSMUSG00000034892 ENSMUST00000037023 683.384±116.05 329.098±23.72 1136.315±364.01 517.675±321.80 676.741±245.57 806.543±92.08 505.555±121.90 725.426±111.66 828.428±516.85 518.478±82.51 631.037±92.78 959.618±356.40 748.063±297.66 551.525±240.63
ENSMUST00000094291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000099021 ENSMUST00000174924 0.657±0.41 0.674±0.42 700.828±700.69 255.550±255.43 0.246±0.00 0.569±0.25 0.444±0.05 0.791±0.25 75.091±139.41 0.607±0.19 0.385±0.00 1.461±1.05 0.108±0.07 0.666±0.14

Loading