C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005Q4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000139915-ENSG00000213741 CGP 9606 14:46839629-49599164
GeneTranscriptPositionBiotype
ENSG00000139915 (MDGA2)
MAM domain containing glycosylphosphatidylinositol anchor 2 		ENST00000357362 (MDGA2-002) 46841785-47343118 protein_coding
ENST00000399232 (MDGA2-001) 46840092-47674954 protein_coding
ENST00000426342 (MDGA2-201) 46839629-47301560 protein_coding
ENST00000472499 (MDGA2-004) 47299347-47343116 processed_transcript
ENST00000482848 (MDGA2-006) 47058600-47343192 nonsense_mediated_decay
ENST00000486952 (MDGA2-005) 47218055-47343234 protein_coding
ENST00000554762 (MDGA2-007) 47035189-47131838 protein_coding
ENST00000555521 (MDGA2-010) 46873919-46920174 retained_intron
ENST00000557238 (MDGA2-008) 46870938-47626525 nonsense_mediated_decay
ENST00000557516 (MDGA2-009) 46873334-46882222 retained_intron
ENSG00000165501 (LRR1)
leucine rich repeat protein 1 		ENST00000298288 (LRR1-001) 49598697-49614672 protein_coding
ENST00000318317 (LRR1-002) 49598761-49614670 protein_coding
ENST00000540712 (LRR1-004) 49598952-49614671 nonsense_mediated_decay
ENST00000554869 (LRR1-003) 49598775-49614671 nonsense_mediated_decay
ENST00000557531 (LRR1-005) 49600412-49607509 processed_transcript
ENSG00000213741 (RPS29)
ribosomal protein S29 		ENST00000245458 (RPS29-001) 49583572-49586376 protein_coding
ENST00000396020 (RPS29-002) 49570984-49586376 protein_coding
ENST00000539688 (RPS29-011) 49597475-49599164 processed_transcript
ENST00000554075 (RPS29-005) 49585298-49586358 retained_intron
ENST00000556230 (RPS29-003) 49585518-49586376 retained_intron
ENST00000557111 (RPS29-010) 49583579-49598690 protein_coding
ENST00000557367 (RPS29-006) 49583579-49586351 retained_intron
ENST00000557519 (RPS29-008) 49585390-49586325 processed_transcript
ENST00000611563 (RPS29-201) 49585711-49586416 protein_coding
ENSG00000214903 (RPS15AP3)
ribosomal protein S15a pseudogene 3 		ENST00000497800 (RPS15AP3-001) 47444106-47444494 processed_pseudogene
ENSG00000244053 (RPL13AP2)
ribosomal protein L13a pseudogene 2 		ENST00000488281 (RPL13AP2-001) 47200575-47201104 processed_pseudogene
ENSG00000244270 (RPL32P29)
ribosomal protein L32 pseudogene 29 		ENST00000497398 (RPL32P29-001) 49577392-49577794 processed_pseudogene
ENSG00000252424 (RNA5SP384)
RNA, 5S ribosomal pseudogene 384 		ENST00000516615 (RNA5SP384-201) 49552633-49552748 rRNA
ENSG00000252919 (Y_RNA)
Y RNA 		ENST00000517110 (Y_RNA.1-922) 49592236-49592337 misc_RNA
ENSG00000258392 (RPA2P1)
replication protein A2 pseudogene 1 		ENST00000556557 (RPA2P1-001) 46996454-46997174 processed_pseudogene
ENSG00000258486 (RN7SL1)
RNA, 7SL, cytoplasmic 1 		ENST00000553637 (RN7SL1-001) 49586579-49586878 non_coding
ENSG00000258639 (RP11-10A2.1)
 ENST00000556608 (RP11-10A2.1-001) 48045481-48046216 processed_pseudogene
ENSG00000258750 (RP11-2G1.2)
 ENST00000555388 (RP11-2G1.2-001) 48398310-48399375 processed_pseudogene
ENSG00000258751 (RP11-2G1.1)
 ENST00000555693 (RP11-2G1.1-001) 48396508-48491767 lincRNA
ENSG00000258868 (RP11-816J8.1)
 ENST00000557062 (RP11-816J8.1-001) 49057713-49077505 lincRNA
ENSG00000259117 (RP11-476J6.1)
 ENST00000556055 (RP11-476J6.1-001) 47801926-47802201 processed_pseudogene
ENSG00000259129 (LINC00648)
long intergenic non-protein coding RNA 648 		ENST00000553747 (LINC00648-003) 47766686-47789943 lincRNA
ENST00000555985 (LINC00648-001) 47764954-47795014 lincRNA
ENST00000556923 (LINC00648-004) 47767600-47789943 lincRNA
ENST00000557749 (LINC00648-002) 47767065-47795092 lincRNA
ENSG00000276168 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000618786 (Metazoa_SRP.1-358) 49586580-49586878 misc_RNA
CIL_0005Q4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034912-ENSMUSG00000034892 CGP 10090 12:66469568-69159186
GeneTranscriptPositionBiotype
ENSMUSG00000034892 (Rps29)
ribosomal protein S29 		ENSMUST00000037023 (Rps29-001) 69157722-69159186 protein_coding
ENSMUST00000094291 (Rps29-002) 69158358-69159054 retained_intron
ENSMUSG00000034912 (Mdga2)
MAM domain containing glycosylphosphatidylinositol anchor 2 		ENSMUST00000037181 (Mdga2-002) 66469568-67222549 protein_coding
ENSMUST00000101379 (Mdga2-007) 66471469-67221202 nonsense_mediated_decay
ENSMUST00000113942 (Mdga2-201) 66470636-66471058 protein_coding
ENSMUST00000177690 (Mdga2-006) 66689496-66825729 processed_transcript
ENSMUST00000178724 (Mdga2-003) 66481622-66486838 retained_intron
ENSMUST00000178814 (Mdga2-001) 66471182-67221221 protein_coding
ENSMUST00000179025 (Mdga2-005) 67212530-67222381 processed_transcript
ENSMUST00000179577 (Mdga2-004) 67196294-67222542 processed_transcript
ENSMUST00000179729 (Mdga2-008) 66619602-66630113 processed_transcript
ENSMUSG00000083191 (Gm15571)
predicted gene 15571 		ENSMUST00000119887 (Gm15571-001) 69141430-69142066 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005Q4_0001ENSG00000139915ENST00000357362ENST00000399232ENST00000426342ENST00000472499ENST00000482848ENST00000486952ENST00000554762ENST00000555521ENST00000557238ENST00000557516ENSG00000165501ENST00000298288ENST00000318317ENST00000540712ENST00000554869ENST00000557531ENSG00000213741ENST00000245458ENST00000396020ENST00000539688ENST00000554075ENST00000556230ENST00000557111ENST00000557367ENST00000557519ENST00000611563ENSG00000214903ENST00000497800ENSG00000244053ENST00000488281ENSG00000244270ENST00000497398ENSG00000252424ENST00000516615ENSG00000252919ENST00000517110ENSG00000258392ENST00000556557ENSG00000258486ENST00000553637ENSG00000258639ENST00000556608ENSG00000258750ENST00000555388ENSG00000258751ENST00000555693ENSG00000258868ENST00000557062ENSG00000259117ENST00000556055ENSG00000259129ENST00000553747ENST00000555985ENST00000556923ENST00000557749ENSG00000276168ENST00000618786CIL_0005Q4_0002ENSMUSG00000034892ENSMUST00000037023ENSMUST00000094291ENSMUSG00000034912ENSMUST00000037181ENSMUST00000101379ENSMUST00000113942ENSMUST00000177690ENSMUST00000178724ENSMUST00000178814ENSMUST00000179025ENSMUST00000179577ENSMUST00000179729ENSMUSG00000083191ENSMUST00000119887
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005Q4_0001ENSG00000139915ENST00000357362ENST00000399232ENST00000426342ENST00000482848ENST00000486952ENST00000554762ENST00000557238ENST00000557516ENSG00000165501ENST00000298288ENST00000318317ENST00000554869ENSG00000213741ENST00000245458ENST00000396020ENST00000611563ENSG00000214903ENST00000497800ENSG00000244053ENST00000488281ENSG00000244270ENST00000497398ENSG00000252424ENST00000516615ENSG00000252919ENST00000517110ENSG00000258392ENST00000556557ENSG00000258486ENST00000553637ENSG00000258639ENST00000556608ENSG00000258750ENST00000555388ENSG00000258751ENST00000555693ENSG00000258868ENST00000557062ENSG00000259117ENST00000556055ENSG00000259129ENST00000553747ENST00000555985ENST00000557749ENSG00000276168ENST00000618786CIL_0005Q4_0002ENSMUSG00000034892ENSMUST00000037023ENSMUSG00000034912ENSMUST00000037181ENSMUST00000101379ENSMUST00000113942ENSMUST00000177690ENSMUST00000178724ENSMUST00000178814ENSMUST00000179025ENSMUST00000179577ENSMUSG00000083191ENSMUST00000119887
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000139915 ENST00000357362 N/A N/A N/A 1.360±0.97 0.013±0.00 0.011±0.00 N/A N/A N/A N/A N/A N/A N/A 0.643±0.37
ENST00000399232 N/A N/A N/A 0.791±0.00 N/A 0.034±0.02 0.018±0.00 0.018±0.00 0.047±0.00 N/A N/A 0.016±0.00 N/A 0.346±0.06
ENST00000426342 N/A N/A N/A 2.065±0.00 N/A N/A N/A N/A N/A N/A N/A 0.007±0.00 0.006±0.00 0.087±0.00
ENST00000472499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482848 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.007±0.00 N/A N/A
ENST00000486952 N/A N/A N/A N/A N/A 0.735±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554762 N/A N/A N/A N/A N/A N/A N/A N/A 0.296±0.00 N/A N/A 0.018±0.00 N/A N/A
ENST00000555521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557238 0.003±0.00 N/A N/A 0.696±0.00 N/A N/A N/A N/A N/A N/A N/A 0.039±0.00 N/A N/A
ENST00000557516 N/A N/A N/A N/A N/A 0.037±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000165501 ENST00000298288 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.921±0.00 N/A 14.243±2.63
ENST00000318317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.396±0.00
ENST00000540712 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.409±0.00
ENST00000557531 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213741 ENST00000245458 434.815±0.00 832.521±0.00 16.340±0.00 176.786±0.00 448.304±0.00 571.190±0.00 209.128±151.09 274.700±168.76 279.768±202.98 648.885±554.74 426.133±310.96 963.199±815.59 977.057±553.25 262.235±164.43
ENST00000396020 N/A N/A 0.484±0.00 1.065±0.00 N/A 2.623±0.00 0.304±0.00 1.006±0.43 0.935±0.00 0.703±0.00 N/A 0.676±0.00 N/A N/A
ENST00000539688 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556230 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557111 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557519 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 193.275±0.00 78.019±0.00 N/A
ENSG00000214903 ENST00000497800 N/A N/A N/A 1.174±0.00 N/A N/A N/A N/A 1.144±0.00 N/A N/A N/A N/A N/A
ENSG00000244053 ENST00000488281 0.945±0.00 1.291±0.00 N/A 0.395±0.02 0.504±0.00 0.747±0.47 0.121±0.00 0.183±0.00 0.124±0.00 0.328±0.00 0.539±0.00 0.376±0.00 N/A 0.776±0.55
ENSG00000244270 ENST00000497398 N/A N/A N/A N/A N/A N/A N/A N/A 8.159±0.00 N/A N/A 9.239±0.00 N/A N/A
ENSG00000252424 ENST00000516615 N/A N/A N/A 0.426±0.00 N/A N/A N/A N/A N/A N/A N/A 1.350±0.00 N/A N/A
ENSG00000252919 ENST00000517110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.394±0.00 N/A 0.641±0.00
ENSG00000258392 ENST00000556557 N/A N/A N/A 0.064±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000258486 ENST00000553637 120.068±0.00 289.052±0.00 5832.210±0.00 69.311±0.00 219.187±0.00 47.270±0.00 2616.757±2609.13 41.831±0.00 7.553±0.00 6841.430±6821.27 2.525±0.00 9053.698±9021.60 10.688±1.74 93.844±0.00
ENSG00000258639 ENST00000556608 N/A N/A N/A N/A N/A N/A 0.186±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000258750 ENST00000555388 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.309±0.00 N/A N/A N/A N/A
ENSG00000258751 ENST00000555693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.025±0.00
ENSG00000258868 ENST00000557062 N/A 0.026±0.00 N/A 0.027±0.00 N/A N/A N/A N/A N/A N/A N/A 0.147±0.00 N/A 0.145±0.00
ENSG00000259117 ENST00000556055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.178±0.00
ENSG00000259129 ENST00000553747 N/A N/A N/A N/A N/A N/A N/A 0.205±0.00 N/A 0.137±0.00 N/A N/A N/A N/A
ENST00000555985 0.018±0.00 0.018±0.00 N/A 0.021±0.00 N/A N/A 0.070±0.04 0.018±0.00 N/A 0.048±0.00 N/A 0.056±0.00 0.584±0.00 0.049±0.00
ENST00000556923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557749 N/A N/A N/A 0.038±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000276168 ENST00000618786 24.804±0.00 N/A N/A N/A N/A N/A N/A 31654.301±0.00 17942.872±17935.33 5.395±0.00 5965.047±5963.05 76.416±67.43 22.237±0.00 1.889±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034892 ENSMUST00000037023 683.384±116.05 329.098±23.72 1136.315±364.01 517.675±321.80 676.741±245.57 806.543±92.08 505.555±121.90 725.426±111.66 828.428±516.85 518.478±82.51 631.037±92.78 959.618±356.40 748.063±297.66 551.525±240.63
ENSMUST00000094291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000034912 ENSMUST00000037181 N/A N/A N/A 1.130±0.00 N/A 0.102±0.00 N/A N/A 0.009±0.00 N/A N/A N/A 0.005±0.00 0.137±0.08
ENSMUST00000101379 N/A N/A 0.013±0.00 2.263±0.00 N/A N/A 0.098±0.01 0.025±0.00 N/A N/A 0.013±0.00 0.086±0.04 0.007±0.00 N/A
ENSMUST00000113942 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.098±0.00 N/A N/A N/A
ENSMUST00000177690 N/A N/A N/A N/A N/A N/A 0.431±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000178724 0.299±0.13 N/A 0.102±0.07 N/A 0.268±0.09 0.310±0.09 0.074±0.02 0.137±0.04 0.052±0.04 0.253±0.09 0.005±0.00 0.420±0.24 0.045±0.04 0.142±0.00
ENSMUST00000178814 N/A N/A N/A 1.144±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.475±0.00
ENSMUST00000179025 0.139±0.06 0.414±0.16 N/A 2.928±0.00 0.080±0.03 0.183±0.05 0.099±0.02 0.029±0.00 0.026±0.01 N/A N/A 0.103±0.05 N/A N/A
ENSMUST00000179577 N/A 0.149±0.00 0.016±0.00 N/A 0.094±0.02 0.073±0.03 0.043±0.00 0.039±0.02 0.020±0.00 0.031±0.00 0.015±0.00 0.098±0.03 0.012±0.00 N/A
ENSMUST00000179729 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000083191 ENSMUST00000119887 N/A N/A 0.016±0.00 N/A 0.241±0.00 N/A N/A N/A 0.014±0.00 N/A N/A 0.251±0.01 0.010±0.00 0.167±0.14

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