C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000213782 DDX47 9606 + 12:12813316-12829981 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000352940 DDX47-002 12813316-12829979 protein_coding
  ENST00000358007 DDX47-001 12813346-12829981 protein_coding
  ENST00000392155 DDX47-010 12820348-12821337 processed_transcript
  ENST00000426619 DDX47-007 12813346-12821969 retained_intron
  ENST00000535722 DDX47-012 12824385-12826292 retained_intron
  ENST00000541537 DDX47-003 12813316-12825107 retained_intron
  ENST00000542123 DDX47-006 12813358-12829981 retained_intron
  ENST00000542832 DDX47-011 12820277-12823259 processed_transcript
  ENST00000544032 DDX47-004 12813346-12822048 retained_intron
  ENST00000544400 DDX47-009 12813360-12824567 protein_coding
  ENST00000544497 DDX47-008 12813355-12814658 retained_intron
  ENST00000545038 DDX47-005 12813354-12829979 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000352940ENST00000358007ENST00000545038
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000352940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.643±0.00 N/A
ENST00000358007 22.913±0.00 3.613±0.00 6.816±1.84 10.285±3.31 9.354±4.68 4.349±2.14 9.332±6.24 9.301±0.03 11.057±4.21 7.407±4.36 17.820±5.38 16.330±6.70 11.423±5.92
ENST00000545038 N/A N/A 2.246±0.00 N/A 1.673±0.00 N/A N/A N/A N/A N/A 3.157±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000KD CIL_0000KD_0001 CGP 12:12715058-12829975
CIL_0003H5 CIL_0003H5_0001 CGP 12:12725917-12829981
CIL_0003H4 CIL_0003H4_0001 CGP 12:12813316-12917937

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005730 IDA nucleolus
GO:0006200 IEA ATP catabolic process
GO:0006364 IMP rRNA processing
GO:0006397 IEA mRNA processing
GO:0008026 IEA ATP-dependent helicase activity
GO:0008380 IMP RNA splicing
GO:0008625 IDA extrinsic apoptotic signaling pathway via death domain receptors
GO:0016020 IDA membrane
GO:0016787 IEA hydrolase activity
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077067 ddx47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 protein_coding Danio_rerio
ENSDARG00000087053 DDX47 (2 of 2) DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 protein_coding Danio_rerio
ENSMUSG00000030204 Ddx47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 protein_coding Mus_musculus

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