C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000KD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000111276-ENSG00000178878 CGP 9606 12:12715058-12829975
GeneTranscriptPositionBiotype
ENSG00000111276 (CDKN1B)
cyclin-dependent kinase inhibitor 1B (p27, Kip1) 		ENST00000228872 (CDKN1B-001) 12717124-12722371 protein_coding
ENST00000396340 (CDKN1B-003) 12717822-12721468 protein_coding
ENST00000442489 (CDKN1B-002) 12717861-12721289 protein_coding
ENST00000477087 (CDKN1B-004) 12715058-12721204 processed_transcript
ENSG00000178878 (APOLD1)
apolipoprotein L domain containing 1 		ENST00000326765 (APOLD1-001) 12725931-12791466 protein_coding
ENST00000356591 (APOLD1-002) 12785607-12791466 protein_coding
ENST00000534843 (APOLD1-005) 12725929-12829975 nonsense_mediated_decay
ENST00000540583 (APOLD1-004) 12725917-12814199 nonsense_mediated_decay
ENST00000588943 (APOLD1-003) 12726026-12812650 retained_intron
ENSG00000207983 (MIR613)
microRNA 613 		ENST00000385248 (MIR613-201) 12764649-12764743 miRNA
ENSG00000213782 (DDX47)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 		ENST00000352940 (DDX47-002) 12813316-12829979 protein_coding
ENST00000358007 (DDX47-001) 12813346-12829981 protein_coding
ENST00000392155 (DDX47-010) 12820348-12821337 processed_transcript
ENST00000426619 (DDX47-007) 12813346-12821969 retained_intron
ENST00000535722 (DDX47-012) 12824385-12826292 retained_intron
ENST00000541537 (DDX47-003) 12813316-12825107 retained_intron
ENST00000542123 (DDX47-006) 12813358-12829981 retained_intron
ENST00000542832 (DDX47-011) 12820277-12823259 processed_transcript
ENST00000544032 (DDX47-004) 12813346-12822048 retained_intron
ENST00000544400 (DDX47-009) 12813360-12824567 protein_coding
ENST00000544497 (DDX47-008) 12813355-12814658 retained_intron
ENST00000545038 (DDX47-005) 12813354-12829979 retained_intron
ENSG00000256658 (RP11-180M15.4)
 ENST00000542291 (RP11-180M15.4-001) 12723297-12724011 antisense
ENSG00000270296 (STX8P1)
syntaxin 8 pseudogene 1 		ENST00000603161 (STX8P1-001) 12771351-12771705 processed_pseudogene
ENSG00000275560 (RP11-180M15.7)
 ENST00000614874 (RP11-180M15.7-001) 12718973-12719521 sense_intronic

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_0000KD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000003031-ENSMUSG00000090698 CGP 10090 6:134920401-134986836
GeneTranscriptPositionBiotype
ENSMUSG00000003031 (Cdkn1b)
cyclin-dependent kinase inhibitor 1B 		ENSMUST00000003115 (Cdkn1b-002) 134920401-134925513 protein_coding
ENSMUST00000067327 (Cdkn1b-001) 134920401-134925513 protein_coding
ENSMUSG00000090698 (Apold1)
apolipoprotein L domain containing 1 		ENSMUST00000167323 (Apold1-201) 134982001-134986836 protein_coding
ENSMUSG00000098318 (1190002F15Rik)
RIKEN cDNA 1190002F15 gene 		ENSMUST00000183867 (1190002F15Rik-001) 134929092-134951577 lincRNA
ENSMUST00000183905 (1190002F15Rik-002) 134929098-134951577 lincRNA
ENSMUST00000184504 (1190002F15Rik-005) 134929155-134951718 lincRNA
ENSMUST00000184991 (1190002F15Rik-004) 134929098-134951343 lincRNA
ENSMUST00000185152 (1190002F15Rik-003) 134929133-134951575 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000KD_0001ENSG00000111276ENST00000228872ENST00000396340ENST00000442489ENST00000477087ENSG00000178878ENST00000326765ENST00000356591ENST00000534843ENST00000540583ENST00000588943ENSG00000207983ENST00000385248ENSG00000213782ENST00000352940ENST00000358007ENST00000392155ENST00000426619ENST00000535722ENST00000541537ENST00000542123ENST00000542832ENST00000544032ENST00000544400ENST00000544497ENST00000545038ENSG00000256658ENST00000542291ENSG00000270296ENST00000603161ENSG00000275560ENST00000614874CIL_0000KD_0002ENSMUSG00000003031ENSMUST00000003115ENSMUST00000067327ENSMUSG00000090698ENSMUST00000167323ENSMUSG00000098318ENSMUST00000183867ENSMUST00000183905ENSMUST00000184504ENSMUST00000184991ENSMUST00000185152
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000KD_0001ENSG00000111276ENST00000228872ENST00000396340ENST00000442489ENSG00000178878ENST00000326765ENST00000356591ENSG00000207983ENST00000385248ENSG00000213782ENST00000352940ENST00000358007ENST00000545038ENSG00000256658ENST00000542291ENSG00000270296ENST00000603161ENSG00000275560ENST00000614874CIL_0000KD_0002ENSMUSG00000003031ENSMUST00000003115ENSMUST00000067327ENSMUSG00000090698ENSMUST00000167323ENSMUSG00000098318ENSMUST00000183867ENSMUST00000183905ENSMUST00000184504ENSMUST00000185152
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000111276 ENST00000228872 27.098±0.00 17.943±0.00 3.066±0.00 23.414±13.32 11.727±7.26 23.472±17.23 6.717±4.50 9.627±4.59 7.985±1.94 24.416±18.70 14.520±13.60 24.217±6.83 19.641±1.09 15.635±9.28
ENST00000396340 N/A N/A N/A 16.386±0.00 N/A N/A N/A N/A N/A N/A N/A 13.959±0.00 N/A N/A
ENST00000442489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.607±0.00 14.218±0.00 13.505±0.00
ENST00000477087 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000178878 ENST00000326765 299.633±0.00 11.643±0.00 1.574±0.00 13.427±0.00 22.281±0.00 13.580±11.73 8.124±6.25 1.999±1.42 2.295±0.00 10.467±0.00 9.202±0.00 4.223±1.85 9.594±0.00 2.646±0.07
ENST00000356591 N/A N/A 0.840±0.00 3.433±0.00 9.755±0.00 N/A 2.878±0.00 2.153±0.00 9.132±0.00 2.562±0.00 4.835±0.00 3.957±0.63 29.831±13.45 N/A
ENST00000534843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588943 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000207983 ENST00000385248 N/A N/A N/A N/A N/A 1.466±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213782 ENST00000352940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.643±0.00 N/A
ENST00000358007 N/A 22.913±0.00 3.613±0.00 6.816±1.84 10.285±3.31 9.354±4.68 4.349±2.14 9.332±6.24 9.301±0.03 11.057±4.21 7.407±4.36 17.820±5.38 16.330±6.70 11.423±5.92
ENST00000392155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426619 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541537 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542123 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542832 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544032 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544497 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545038 N/A N/A N/A 2.246±0.00 N/A 1.673±0.00 N/A N/A N/A N/A N/A 3.157±0.00 N/A N/A
ENSG00000256658 ENST00000542291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.377±0.00
ENSG00000270296 ENST00000603161 N/A 0.081±0.00 N/A N/A N/A 0.160±0.00 N/A N/A N/A N/A N/A N/A 0.050±0.00 0.128±0.03
ENSG00000275560 ENST00000614874 0.628±0.00 1.727±0.00 0.636±0.00 0.721±0.06 1.361±1.07 0.970±0.70 0.379±0.11 1.749±1.40 0.486±0.28 1.246±0.31 N/A 1.148±0.34 0.155±0.06 0.510±0.06
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000003031 ENSMUST00000003115 11.492±4.45 36.208±2.52 11.953±0.43 13.390±7.64 27.090±10.61 26.432±4.92 6.786±2.17 14.098±2.16 8.007±1.70 23.636±3.17 10.410±0.47 35.329±7.88 9.067±2.09 2.035±0.80
ENSMUST00000067327 3.684±1.68 N/A 3.835±0.33 3.646±1.72 3.638±0.96 3.398±0.59 1.887±0.34 2.147±0.27 2.641±1.68 5.092±1.16 2.594±0.74 7.002±6.17 2.134±0.92 0.473±0.17
ENSMUSG00000090698 ENSMUST00000167323 2.632±0.23 2.098±0.80 0.951±0.06 0.840±0.28 1.419±0.44 1.348±0.24 2.137±0.19 0.454±0.18 0.733±0.40 1.317±0.26 0.633±0.20 2.466±1.28 0.619±0.14 0.393±0.21
ENSMUSG00000098318 ENSMUST00000183867 2.190±0.12 0.190±0.01 3.058±0.54 15.408±7.51 0.470±0.09 2.685±1.24 0.380±0.16 1.142±0.27 57.280±47.82 0.616±0.34 0.183±0.02 3.279±2.54 7.065±6.29 0.120±0.01
ENSMUST00000183905 N/A N/A N/A 0.113±0.00 0.598±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184504 0.173±0.00 N/A N/A N/A 0.246±0.19 0.177±0.00 0.086±0.00 N/A N/A N/A N/A 0.642±0.36 0.322±0.19 0.091±0.00
ENSMUST00000184991 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185152 0.294±0.01 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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