C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003H4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000213782-ENSG00000013588 CGP 9606 12:12813316-12917937
GeneTranscriptPositionBiotype
ENSG00000013588 (GPRC5A)
G protein-coupled receptor, class C, group 5, member A 		ENST00000014914 (GPRC5A-001) 12890782-12917937 protein_coding
ENST00000534831 (GPRC5A-004) 12891974-12909070 protein_coding
ENST00000537783 (GPRC5A-002) 12891559-12909876 retained_intron
ENST00000540125 (GPRC5A-005) 12909069-12912509 protein_coding
ENST00000542056 (GPRC5A-003) 12891579-12913133 processed_transcript
ENSG00000178878 (APOLD1)
apolipoprotein L domain containing 1 		ENST00000326765 (APOLD1-001) 12725931-12791466 protein_coding
ENST00000356591 (APOLD1-002) 12785607-12791466 protein_coding
ENST00000534843 (APOLD1-005) 12725929-12829975 nonsense_mediated_decay
ENST00000540583 (APOLD1-004) 12725917-12814199 nonsense_mediated_decay
ENST00000588943 (APOLD1-003) 12726026-12812650 retained_intron
ENSG00000213782 (DDX47)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 		ENST00000352940 (DDX47-002) 12813316-12829979 protein_coding
ENST00000358007 (DDX47-001) 12813346-12829981 protein_coding
ENST00000392155 (DDX47-010) 12820348-12821337 processed_transcript
ENST00000426619 (DDX47-007) 12813346-12821969 retained_intron
ENST00000535722 (DDX47-012) 12824385-12826292 retained_intron
ENST00000541537 (DDX47-003) 12813316-12825107 retained_intron
ENST00000542123 (DDX47-006) 12813358-12829981 retained_intron
ENST00000542832 (DDX47-011) 12820277-12823259 processed_transcript
ENST00000544032 (DDX47-004) 12813346-12822048 retained_intron
ENST00000544400 (DDX47-009) 12813360-12824567 protein_coding
ENST00000544497 (DDX47-008) 12813355-12814658 retained_intron
ENST00000545038 (DDX47-005) 12813354-12829979 retained_intron
ENSG00000234498 (RPL13AP20)
ribosomal protein L13a pseudogene 20 		ENST00000459725 (RPL13AP20-001) 12875499-12876107 processed_pseudogene
ENSG00000241352 (RP11-392P7.1)
 ENST00000475592 (RP11-392P7.1-001) 12850982-12851740 processed_pseudogene
ENSG00000242329 (RP11-59H1.1)
 ENST00000464893 (RP11-59H1.1-001) 12840804-12841079 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0003H4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030204-ENSMUSG00000046733 CGP 10090 6:135011612-135084709
GeneTranscriptPositionBiotype
ENSMUSG00000030204 (Ddx47)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 		ENSMUST00000032326 (Ddx47-001) 135011612-135023776 protein_coding
ENSMUST00000123022 (Ddx47-006) 135015351-135019066 processed_transcript
ENSMUST00000130851 (Ddx47-003) 135011622-135019037 protein_coding
ENSMUST00000131719 (Ddx47-005) 135011626-135016628 processed_transcript
ENSMUST00000134549 (Ddx47-007) 135015822-135018533 retained_intron
ENSMUST00000154558 (Ddx47-010) 135011653-135021578 protein_coding
ENSMUST00000155022 (Ddx47-008) 135019000-135021178 retained_intron
ENSMUST00000155277 (Ddx47-002) 135011632-135023772 retained_intron
ENSMUST00000155698 (Ddx47-004) 135011635-135015626 retained_intron
ENSMUSG00000046733 (Gprc5a)
G protein-coupled receptor, family C, group 5, member A 		ENSMUST00000050104 (Gprc5a-001) 135065651-135084709 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003H4_0001ENSG00000013588ENST00000014914ENST00000534831ENST00000537783ENST00000540125ENST00000542056ENSG00000178878ENST00000326765ENST00000356591ENST00000534843ENST00000540583ENST00000588943ENSG00000213782ENST00000352940ENST00000358007ENST00000392155ENST00000426619ENST00000535722ENST00000541537ENST00000542123ENST00000542832ENST00000544032ENST00000544400ENST00000544497ENST00000545038ENSG00000234498ENST00000459725ENSG00000241352ENST00000475592ENSG00000242329ENST00000464893CIL_0003H4_0002ENSMUSG00000030204ENSMUST00000032326ENSMUST00000123022ENSMUST00000130851ENSMUST00000131719ENSMUST00000134549ENSMUST00000154558ENSMUST00000155022ENSMUST00000155277ENSMUST00000155698ENSMUSG00000046733ENSMUST00000050104
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003H4_0001ENSG00000013588ENST00000014914ENST00000534831ENST00000537783ENST00000542056ENSG00000178878ENST00000326765ENST00000356591ENSG00000213782ENST00000352940ENST00000358007ENST00000545038ENSG00000234498ENST00000459725ENSG00000241352ENST00000475592ENSG00000242329ENST00000464893CIL_0003H4_0002ENSMUSG00000030204ENSMUST00000032326ENSMUST00000154558ENSMUST00000155277ENSMUSG00000046733ENSMUST00000050104
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000013588 ENST00000014914 4.965±0.00 N/A N/A N/A 2.208±0.54 1.936±1.20 N/A 0.038±0.00 N/A 30.863±21.17 0.061±0.00 15.485±12.76 5.486±3.13 2.098±0.00
ENST00000534831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.610±4.63 N/A
ENST00000537783 N/A N/A 0.273±0.00 0.317±0.00 N/A N/A N/A N/A 1.860±0.00 N/A N/A 5.593±0.00 N/A N/A
ENST00000540125 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542056 N/A N/A N/A N/A N/A N/A N/A 3.175±0.00 N/A N/A 1.095±0.00 122.677±0.00 12.328±4.61 N/A
ENSG00000178878 ENST00000326765 299.633±0.00 11.643±0.00 1.574±0.00 13.427±0.00 22.281±0.00 13.580±11.73 8.124±6.25 1.999±1.42 2.295±0.00 10.467±0.00 9.202±0.00 4.223±1.85 9.594±0.00 2.646±0.07
ENST00000356591 N/A N/A 0.840±0.00 3.433±0.00 9.755±0.00 N/A 2.878±0.00 2.153±0.00 9.132±0.00 2.562±0.00 4.835±0.00 3.957±0.63 29.831±13.45 N/A
ENST00000534843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588943 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213782 ENST00000352940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.643±0.00 N/A
ENST00000358007 N/A 22.913±0.00 3.613±0.00 6.816±1.84 10.285±3.31 9.354±4.68 4.349±2.14 9.332±6.24 9.301±0.03 11.057±4.21 7.407±4.36 17.820±5.38 16.330±6.70 11.423±5.92
ENST00000392155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426619 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541537 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542123 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542832 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544032 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544497 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545038 N/A N/A N/A 2.246±0.00 N/A 1.673±0.00 N/A N/A N/A N/A N/A 3.157±0.00 N/A N/A
ENSG00000234498 ENST00000459725 0.390±0.00 1.251±0.00 N/A 0.171±0.00 0.464±0.37 0.711±0.10 0.149±0.00 0.744±0.00 0.037±0.00 0.134±0.08 1.015±0.00 0.493±0.26 0.135±0.06 0.430±0.17
ENSG00000241352 ENST00000475592 0.120±0.00 0.216±0.00 N/A 0.127±0.00 0.107±0.00 0.066±0.00 0.046±0.03 0.054±0.00 0.032±0.00 0.017±0.00 0.096±0.00 0.179±0.14 0.041±0.01 0.136±0.04
ENSG00000242329 ENST00000464893 N/A N/A N/A N/A N/A N/A N/A 0.283±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030204 ENSMUST00000032326 19.504±3.22 14.209±8.98 31.228±3.40 18.696±6.17 12.809±4.63 13.619±4.17 14.603±2.60 16.819±3.97 24.577±13.67 25.030±2.77 11.016±1.42 16.226±8.47 30.214±7.48 8.965±2.40
ENSMUST00000123022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130851 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134549 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154558 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.759±7.71 N/A
ENSMUST00000155022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155277 4.081±0.00 2.413±0.57 3.939±0.69 4.484±0.82 2.543±0.49 2.269±0.30 1.103±0.11 1.697±0.00 1.994±0.46 3.326±0.40 0.663±0.09 3.427±0.59 1.950±0.20 0.760±0.03
ENSMUST00000155698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000046733 ENSMUST00000050104 1.905±1.20 0.151±0.05 1.292±0.28 0.103±0.04 0.381±0.04 63.992±5.25 0.920±0.51 1.713±0.23 0.100±0.05 160.582±9.52 0.158±0.09 0.448±0.20 15.322±19.88 0.128±0.12

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