C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030204 Ddx47 10090 + 6:135011612-135023776 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032326 Ddx47-001 135011612-135023776 protein_coding
  ENSMUST00000123022 Ddx47-006 135015351-135019066 processed_transcript
  ENSMUST00000130851 Ddx47-003 135011622-135019037 protein_coding
  ENSMUST00000131719 Ddx47-005 135011626-135016628 processed_transcript
  ENSMUST00000134549 Ddx47-007 135015822-135018533 retained_intron
  ENSMUST00000154558 Ddx47-010 135011653-135021578 protein_coding
  ENSMUST00000155022 Ddx47-008 135019000-135021178 retained_intron
  ENSMUST00000155277 Ddx47-002 135011632-135023772 retained_intron
  ENSMUST00000155698 Ddx47-004 135011635-135015626 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032326ENSMUST00000154558ENSMUST00000155277
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032326 19.504±3.22 14.209±8.98 31.228±3.40 18.696±6.17 12.809±4.63 13.619±4.17 14.603±2.60 16.819±3.97 24.577±13.67 25.030±2.77 11.016±1.42 16.226±8.47 30.214±7.48 8.965±2.40
ENSMUST00000154558 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.759±7.71 N/A
ENSMUST00000155277 4.081±0.00 2.413±0.57 3.939±0.69 4.484±0.82 2.543±0.49 2.269±0.30 1.103±0.11 1.697±0.00 1.994±0.46 3.326±0.40 0.663±0.09 3.427±0.59 1.950±0.20 0.760±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003H5 CIL_0003H5_0002 CGP 6:134982001-135023776
CIL_0003H4 CIL_0003H4_0002 CGP 6:135011612-135084709

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005730 ISS nucleolus
GO:0006200 IEA ATP catabolic process
GO:0006364 ISS rRNA processing
GO:0006397 IEA mRNA processing
GO:0008026 IEA ATP-dependent helicase activity
GO:0008380 ISS RNA splicing
GO:0008625 ISS extrinsic apoptotic signaling pathway via death domain receptors
GO:0016020 IEA membrane
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077067 ddx47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 protein_coding Danio_rerio
ENSDARG00000087053 DDX47 (2 of 2) DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 protein_coding Danio_rerio
ENSG00000213782 DDX47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 protein_coding Homo_sapiens

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