C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000358007 DDX47-001 ENSG00000213782 9606 + 12:12813346-12829981 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000358007
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000358007 22.913±0.00 3.613±0.00 6.816±1.84 10.285±3.31 9.354±4.68 4.349±2.14 9.332±6.24 9.301±0.03 11.057±4.21 7.407±4.36 17.820±5.38 16.330±6.70 11.423±5.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000KD CIL_0000KD_0001 CGP 12:12715058-12829975
CIL_0003H5 CIL_0003H5_0001 CGP 12:12725917-12829981
CIL_0003H4 CIL_0003H4_0001 CGP 12:12813316-12917937

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005730 IDA nucleolus
GO:0006200 IEA ATP catabolic process
GO:0006364 IMP rRNA processing
GO:0006397 IEA mRNA processing
GO:0008026 IEA ATP-dependent helicase activity
GO:0008380 IMP RNA splicing
GO:0008625 IDA extrinsic apoptotic signaling pathway via death domain receptors
GO:0016020 IDA membrane
GO:0016787 IEA hydrolase activity
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032326 Ddx47-001 protein_coding Mus_musculus 0 1605
ENSMUST00000155277 Ddx47-002 retained_intron Mus_musculus 0 1240
ENSMUST00000154558 Ddx47-010 protein_coding Mus_musculus 0 867
ENSMUST00000123022 Ddx47-006 processed_transcript Mus_musculus 0 739
ENSMUST00000131719 Ddx47-005 processed_transcript Mus_musculus 0 632
ENSMUST00000134549 Ddx47-007 retained_intron Mus_musculus 0 630
ENSMUST00000130851 Ddx47-003 protein_coding Mus_musculus 0 425
ENSMUST00000155698 Ddx47-004 retained_intron Mus_musculus 0 392

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