C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: copine I
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000401607 CPNE1-028 ENSG00000214078 9606 - 20:35626159-35664877 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverLungMuscleENST00000401607
Transcript ID Liver Lung Muscle
ENST00000401607 13.278±0.00 41.164±0.00 13.012±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005FU CIL_0005FU_0001 CGP 20:35615892-35664956

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000147627 Cpne1-009 nonsense_mediated_decay Mus_musculus 0 1777
ENSMUST00000109608 Cpne1-001 protein_coding Mus_musculus 0 1685
ENSMUST00000109607 Cpne1-002 protein_coding Mus_musculus 0 1685
ENSMUST00000127956 Gm28036-002 nonsense_mediated_decay Mus_musculus 0 1685
ENSMUST00000079312 Cpne1-008 protein_coding Mus_musculus 0 1574
ENSMUST00000142960 Cpne1-013 protein_coding Mus_musculus 0 787
ENSMUST00000132494 Gm28036-001 nonsense_mediated_decay Mus_musculus 0 719
ENSMUST00000133921 Cpne1-011 protein_coding Mus_musculus 0 621
ENSMUST00000153634 Cpne1-010 protein_coding Mus_musculus 0 575
ENSMUST00000184265 Cpne1-015 protein_coding Mus_musculus 0 497
ENSMUST00000154889 Cpne1-012 protein_coding Mus_musculus 0 470
ENSMUST00000136296 Cpne1-005 protein_coding Mus_musculus 0 468
ENSMUST00000142975 Cpne1-003 retained_intron Mus_musculus 0 468
ENSMUST00000184152 Cpne1-016 protein_coding Mus_musculus 0 453
ENSMUST00000159952 Gm28036-008 nonsense_mediated_decay Mus_musculus 0 440
ENSMUST00000184899 Gm28036-004 nonsense_mediated_decay Mus_musculus 0 368
ENSMUST00000183972 Gm28036-005 nonsense_mediated_decay Mus_musculus 0 357
ENSMUST00000160165 Gm28036-007 nonsense_mediated_decay Mus_musculus 0 276
ENSMUST00000162612 Gm28036-006 nonsense_mediated_decay Mus_musculus 0 276
ENSMUST00000131377 Rbm12-004 protein_coding Mus_musculus 2e-21 108
ENSMUST00000109604 Rbm12-002 protein_coding Mus_musculus 2e-21 108
ENSMUST00000059647 Rbm12-001 protein_coding Mus_musculus 2e-21 108
ENSMUST00000183518 Gm28036-003 protein_coding Mus_musculus 2e-21 108

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