C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: poly(A) polymerase beta (testis specific)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000218823 PAPOLB 9606 - 7:4857733-4861994 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000404991 PAPOLB-001 4857733-4861994 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000404991
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000404991 0.007±0.00 0.015±0.00 0.039±0.01 0.153±0.00 0.013±0.01 0.033±0.00 0.129±0.00 0.310±0.00 0.088±0.00 0.009±0.00 0.007±0.00 13.315±5.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002MG CIL_0002MG_0001 CGP 7:4737388-4883719
CIL_0002MD CIL_0002MD_0001 CGP 7:4797055-4883719
CIL_0002ME CIL_0002ME_0001 CGP 7:4857733-4959213

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 IBA mRNA splicing, via spliceosome
GO:0003723 IEA RNA binding
GO:0004652 IBA:IEA polynucleotide adenylyltransferase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IBA:IEA nucleus
GO:0005737 IBA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0006369 IBA termination of RNA polymerase II transcription
GO:0006378 IBA mRNA polyadenylation
GO:0016779 IEA nucleotidyltransferase activity
GO:0031123 IEA RNA 3'-end processing
GO:0043631 IEA RNA polyadenylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009585 papola poly(A) polymerase alpha protein_coding Danio_rerio
ENSMUSG00000074817 Papolb poly (A) polymerase beta (testis specific) protein_coding Mus_musculus

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