C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: poly (A) polymerase beta (testis specific)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000074817 Papolb 10090 - 5:142525838-142530076 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000099400 Papolb-001 142525838-142530076 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000099400
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000099400 0.071±0.04 0.055±0.02 0.023±0.00 0.114±0.06 0.065±0.05 0.039±0.01 0.032±0.01 0.030±0.02 0.010±0.01 0.133±0.03 0.008±0.00 0.063±0.04 0.049±0.03 91.265±31.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002MG CIL_0002MG_0002 CGP 5:142463931-142551098
CIL_0002MD CIL_0002MD_0002 CGP 5:142484839-142551098
CIL_0002ME CIL_0002ME_0002 CGP 5:142525838-142608800

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 IBA mRNA splicing, via spliceosome
GO:0003723 IEA RNA binding
GO:0004652 IBA polynucleotide adenylyltransferase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005783 IPI endoplasmic reticulum
GO:0006369 IBA termination of RNA polymerase II transcription
GO:0006378 IBA mRNA polyadenylation
GO:0043631 ISA RNA polyadenylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009585 papola poly(A) polymerase alpha protein_coding Danio_rerio
ENSG00000218823 PAPOLB poly(A) polymerase beta (testis specific) protein_coding Homo_sapiens

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