C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A) polymerase beta (testis specific)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000404991 PAPOLB-001 ENSG00000218823 9606 - 7:4857733-4861994 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000404991
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000404991 0.007±0.00 0.015±0.00 0.039±0.01 0.153±0.00 0.013±0.01 0.033±0.00 0.129±0.00 0.310±0.00 0.088±0.00 0.009±0.00 0.007±0.00 13.315±5.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002MG CIL_0002MG_0001 CGP 7:4737388-4883719
CIL_0002MD CIL_0002MD_0001 CGP 7:4797055-4883719
CIL_0002ME CIL_0002ME_0001 CGP 7:4857733-4959213

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IBA mRNA splicing, via spliceosome
GO:0003723 IEA RNA binding
GO:0004652 IBA:IEA polynucleotide adenylyltransferase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IBA:IEA nucleus
GO:0005737 IBA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0006369 IBA termination of RNA polymerase II transcription
GO:0006378 IBA mRNA polyadenylation
GO:0016779 IEA nucleotidyltransferase activity
GO:0031123 IEA RNA 3'-end processing
GO:0043631 IEA RNA polyadenylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099400 Papolb-001 protein_coding Mus_musculus 0 2180
ENSMUST00000170002 Papola-010 protein_coding Mus_musculus 0 2150
ENSMUST00000021535 Papola-003 nonsense_mediated_decay Mus_musculus 0 2034
ENSMUST00000168186 Papola-002 protein_coding Mus_musculus 0 2034
ENSMUST00000109901 Papola-001 protein_coding Mus_musculus 0 2034
ENSMUST00000163473 Papola-009 protein_coding Mus_musculus 0 2025
ENSMUST00000166329 Papola-008 nonsense_mediated_decay Mus_musculus 0 1509
ENSMUST00000166498 Papola-005 retained_intron Mus_musculus 0 1371
ENSMUST00000169938 Papola-004 nonsense_mediated_decay Mus_musculus 0 1351
ENSMUST00000163805 Papola-006 retained_intron Mus_musculus 0 1055
ENSMUST00000166735 Papola-007 protein_coding Mus_musculus 0 996
ENSMUST00000166471 Papola-011 protein_coding Mus_musculus 0 898
ENSMUST00000164798 Papola-019 protein_coding Mus_musculus 0 776
ENSMUST00000165584 Papola-013 processed_transcript Mus_musculus 0 773
ENSMUST00000170540 Papola-015 protein_coding Mus_musculus 0 754
ENSMUST00000169524 Papola-017 nonsense_mediated_decay Mus_musculus 0 545
ENSMUST00000170831 Papola-016 retained_intron Mus_musculus 0 327

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