C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif-containing 16
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000047821 Trim16 10090 + 11:62820231-62850808 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000055006 Trim16-001 62820231-62842936 protein_coding
  ENSMUST00000072639 Trim16-004 62820253-62850808 protein_coding
  ENSMUST00000108703 Trim16-002 62820469-62842936 protein_coding
  ENSMUST00000128623 Trim16-005 62833800-62841457 processed_transcript
  ENSMUST00000147942 Trim16-003 62820440-62821245 processed_transcript

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000055006ENSMUST00000072639ENSMUST00000108703ENSMUST00000128623ENSMUST00000147942
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000055006 3.904±0.59 1.055±0.32 7.987±1.13 1.190±0.27 2.865±0.89 18.164±4.33 1.740±0.30 1.228±0.41 0.246±0.12 13.113±3.82 7.780±1.66 1.654±0.75 1.155±0.83
ENSMUST00000072639 N/A 0.667±0.35 N/A N/A N/A 9.648±3.62 N/A N/A 0.040±0.00 N/A N/A 0.762±0.01 0.293±0.00
ENSMUST00000108703 1.848±0.00 N/A 2.275±0.43 0.146±0.00 2.570±2.55 5.300±1.03 0.568±0.19 0.417±0.00 0.098±0.04 5.525±1.69 3.822±0.46 1.091±0.52 0.819±0.30
ENSMUST00000128623 N/A 0.324±0.00 N/A 0.479±0.00 N/A N/A N/A N/A 0.024±0.00 N/A N/A 1.400±0.00 1.166±0.41
ENSMUST00000147942 N/A 0.544±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QF CIL_0008QF_0002 VISTA 11:62683404-63286950
CIL_0000DU CIL_0000DU_0002 CGP 11:62753377-62850808
CIL_0005CX CIL_0005CX_0002 CGP 11:62820231-62877465

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010673 trim16 tripartite motif-containing 16 protein_coding Danio_rerio
ENSG00000108448 TRIM16L tripartite motif containing 16-like protein_coding Homo_sapiens
ENSG00000221926 TRIM16 tripartite motif containing 16 protein_coding Homo_sapiens

Loading