C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: shisa family member 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000558583 SHISA9-001 ENSG00000237515 9606 + 16:12901620-13240413 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000558583
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000558583 0.061±0.00 0.167±0.00 2.385±0.48 0.154±0.00 0.860±0.00 0.188±0.00 0.355±0.00 0.217±0.00 0.150±0.00 0.195±0.17 0.418±0.27 0.313±0.03 0.785±0.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007DX CIL_0007DX_0001 CGP 16:12901620-13952345

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008328 ISS ionotropic glutamate receptor complex
GO:0030054 IEA cell junction
GO:0032281 IEA alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0032591 ISS dendritic spine membrane
GO:0045202 ISS synapse
GO:0048172 ISS regulation of short-term neuronal synaptic plasticity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170672 Shisa9-002 protein_coding Mus_musculus 0 1797
ENSMUST00000023138 Shisa9-001 protein_coding Mus_musculus 0 1212
ENSMUST00000182889 Shisa9-003 processed_transcript Mus_musculus 0 1171
ENSMUST00000182154 Shisa9-004 processed_transcript Mus_musculus 0 691

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