C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Protein LOC101928524 {ECO:0000313|Ensembl:ENSP00000469443}
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000239665 RP11-295P9.3 9606 + 10:13610047-13668299 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000419851 RP11-295P9.3-003 13646670-13655796 retained_intron
  ENST00000430721 RP11-295P9.3-005 13653825-13655929 retained_intron
  ENST00000437446 RP11-295P9.3-004 13638825-13645279 retained_intron
  ENST00000440878 RP11-295P9.3-002 13631333-13648230 processed_transcript
  ENST00000593351 RP11-295P9.3-022 13648184-13668299 processed_transcript
  ENST00000593358 RP11-295P9.3-020 13649284-13655482 processed_transcript
  ENST00000594575 RP11-295P9.3-014 13646844-13655482 retained_intron
  ENST00000595538 RP11-295P9.3-008 13616531-13645072 nonsense_mediated_decay
  ENST00000596044 RP11-295P9.3-009 13630284-13645011 nonsense_mediated_decay
  ENST00000596235 RP11-295P9.3-018 13644791-13655482 retained_intron
  ENST00000596499 RP11-295P9.3-016 13632680-13655482 processed_transcript
  ENST00000597920 RP11-295P9.3-015 13631288-13655482 retained_intron
  ENST00000598625 RP11-295P9.3-021 13652052-13655476 retained_intron
  ENST00000599378 RP11-295P9.3-006 13636997-13644980 processed_transcript
  ENST00000599639 RP11-295P9.3-012 13631768-13655482 processed_transcript
  ENST00000600249 RP11-295P9.3-017 13643644-13653446 processed_transcript
  ENST00000600501 RP11-295P9.3-013 13644576-13648773 retained_intron
  ENST00000600511 RP11-295P9.3-019 13649264-13655485 processed_transcript
  ENST00000601075 RP11-295P9.3-010 13631143-13644984 processed_transcript
  ENST00000601460 RP11-295P9.3-007 13610047-13655929 protein_coding
  ENST00000601758 RP11-295P9.3-011 13631722-13654427 processed_transcript
  ENST00000610032 RP11-295P9.3-023 13638646-13644563 processed_transcript
  ENST00000610395 RP11-295P9.3-026 13646770-13655482 retained_intron
  ENST00000611235 RP11-295P9.3-045 13649228-13655436 processed_transcript
  ENST00000612284 RP11-295P9.3-039 13638016-13655482 processed_transcript
  ENST00000612296 RP11-295P9.3-033 13647117-13655482 retained_intron
  ENST00000612304 RP11-295P9.3-048 13649290-13655436 processed_transcript
  ENST00000612515 RP11-295P9.3-028 13646344-13655482 retained_intron
  ENST00000612602 RP11-295P9.3-053 13649249-13655436 processed_transcript
  ENST00000612960 RP11-295P9.3-049 13649300-13655432 processed_transcript
  ENST00000613031 RP11-295P9.3-046 13649248-13655428 processed_transcript
  ENST00000613191 RP11-295P9.3-038 13646833-13655916 processed_transcript
  ENST00000613332 RP11-295P9.3-044 13644916-13655425 processed_transcript
  ENST00000613467 RP11-295P9.3-031 13632772-13655482 processed_transcript
  ENST00000613937 RP11-295P9.3-059 13641525-13655436 retained_intron
  ENST00000613992 RP11-295P9.3-032 13647553-13655482 retained_intron
  ENST00000614899 RP11-295P9.3-041 13631347-13644987 processed_transcript
  ENST00000614991 RP11-295P9.3-060 13644224-13655436 retained_intron
  ENST00000615209 RP11-295P9.3-035 13648185-13655929 processed_transcript
  ENST00000615691 RP11-295P9.3-024 13631296-13655482 processed_transcript
  ENST00000616092 RP11-295P9.3-052 13649296-13655431 processed_transcript
  ENST00000616222 RP11-295P9.3-034 13651066-13655433 retained_intron
  ENST00000616861 RP11-295P9.3-056 13651426-13655436 processed_transcript
  ENST00000616949 RP11-295P9.3-043 13637016-13655436 processed_transcript
  ENST00000617260 RP11-295P9.3-042 13631338-13655436 processed_transcript
  ENST00000617534 RP11-295P9.3-047 13649278-13655436 processed_transcript
  ENST00000618536 RP11-295P9.3-050 13649247-13655432 processed_transcript
  ENST00000618688 RP11-295P9.3-057 13647872-13655436 retained_intron
  ENST00000619389 RP11-295P9.3-030 13646667-13652460 processed_transcript
  ENST00000619884 RP11-295P9.3-036 13648764-13655910 processed_transcript
  ENST00000619944 RP11-295P9.3-058 13646966-13655436 processed_transcript
  ENST00000620488 RP11-295P9.3-055 13651369-13654414 processed_transcript
  ENST00000620600 RP11-295P9.3-051 13649293-13655433 processed_transcript
  ENST00000620849 RP11-295P9.3-027 13645008-13654401 processed_transcript
  ENST00000621308 RP11-295P9.3-025 13644917-13655482 processed_transcript
  ENST00000621394 RP11-295P9.3-054 13649458-13655423 processed_transcript
  ENST00000621532 RP11-295P9.3-029 13646896-13654422 retained_intron
  ENST00000622389 RP11-295P9.3-040 13637855-13655482 retained_intron
  ENST00000622799 RP11-295P9.3-037 13648205-13655925 processed_transcript
  ENST00000623244 RP11-295P9.3-061 13637423-13637950 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonLiverLungOvaryENST00000610032
Transcript ID Bladder Brain Breast Colon Liver Lung Ovary
ENST00000610032 1.922±0.00 2.427±0.00 2.276±0.00 1.488±0.00 2.134±0.00 2.998±0.00 1.850±0.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000968 CIL_000968_0001 VISTA 10:13045564-13647145
CIL_000965 CIL_000965_0001 VISTA 10:13372414-13973663
CIL_000966 CIL_000966_0001 VISTA 10:13410200-14012149
CIL_00045D CIL_00045D_0002 CGP 10:13438484-13630868
CIL_00061W CIL_00061W_0002 CGP 10:13610047-14462142

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005681 IEA spliceosomal complex
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058306 prpf18 PRP18 pre-mRNA processing factor 18 homolog (yeast) protein_coding Danio_rerio

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