C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ISY1 splicing factor homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000240682 ISY1 9606 - 3:129127415-129161293 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000273541 ISY1-004 129129374-129161048 protein_coding
  ENST00000393292 ISY1-002 129130017-129161037 protein_coding
  ENST00000393295 ISY1-001 129127415-129161293 protein_coding
  ENST00000471306 ISY1-007 129129791-129130703 retained_intron
  ENST00000471497 ISY1-005 129129374-129156889 processed_transcript
  ENST00000485703 ISY1-003 129134075-129161028 nonsense_mediated_decay
  ENST00000496163 ISY1-006 129129879-129145874 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000273541ENST00000393292ENST00000393295ENST00000471306ENST00000485703
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000273541 7.385±0.00 10.609±0.00 1.643±0.00 2.212±0.19 4.685±1.70 3.805±2.85 2.191±1.45 6.740±0.00 0.968±0.00 3.382±2.20 2.661±0.86 5.255±1.92 9.464±1.49 7.264±0.00
ENST00000393292 5.679±0.00 N/A N/A 2.240±1.35 3.642±0.00 6.582±4.29 2.007±1.17 N/A 2.467±0.00 N/A 3.176±1.75 7.755±4.52 N/A 7.233±0.00
ENST00000393295 2.242±0.00 4.096±0.00 N/A 1.103±0.87 3.503±0.00 1.672±1.09 0.614±0.41 1.688±1.03 1.199±0.00 1.671±0.97 0.979±0.00 3.457±1.28 3.182±0.67 2.731±0.19
ENST00000471306 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.351±0.00 24.682±0.00 N/A
ENST00000485703 N/A N/A 2.307±0.00 1.120±0.00 N/A N/A N/A N/A 4.303±0.00 3.008±0.00 N/A 9.856±4.51 20.158±0.00 12.667±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000311 CIL_000311_0001 CGP 3:129087569-129161036
CIL_00007J CIL_00007J_0002 CGP 3:129127415-129183922

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063466 rab43 RAB43, member RAS oncogene family protein_coding Danio_rerio
ENSMUSG00000030056 Isy1 ISY1 splicing factor homolog (S. cerevisiae) protein_coding Mus_musculus

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