C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ISY1 splicing factor homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393295 ISY1-001 ENSG00000240682 9606 - 3:129127415-129161293 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000393295
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000393295 2.242±0.00 4.096±0.00 1.103±0.87 3.503±0.00 1.672±1.09 0.614±0.41 1.688±1.03 1.199±0.00 1.671±0.97 0.979±0.00 3.457±1.28 3.182±0.67 2.731±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000311 CIL_000311_0001 CGP 3:129087569-129161036
CIL_00007J CIL_00007J_0002 CGP 3:129127415-129183922

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000089497 Isy1-201 protein_coding Mus_musculus 0 1094
ENSDART00000093148 rab43-001 protein_coding Danio_rerio 0 444
ENSDART00000156205 rab43-002 retained_intron Danio_rerio 1e-36 159

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