C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00007J_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000063466-ENSDARG00000070922 CGP 7955 11:461198-484619
GeneTranscriptPositionBiotype
ENSDARG00000063466 (rab43)
RAB43, member RAS oncogene family 		ENSDART00000093148 (rab43-001) 461198-473297 protein_coding
ENSDART00000156205 (rab43-002) 470020-473093 retained_intron
ENSDARG00000070922 (cnbpb)
CCHC-type zinc finger, nucleic acid binding protein b 		ENSDART00000104520 (cnbpb-001) 478773-484619 protein_coding
ENSDART00000154888 (cnbpb-002) 479246-484445 protein_coding
CIL_00007J_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000240682-ENSG00000169714 CGP 9606 3:129127415-129183922
GeneTranscriptPositionBiotype
ENSG00000169714 (CNBP)
CCHC-type zinc finger, nucleic acid binding protein 		ENST00000422453 (CNBP-001) 129169484-129183922 protein_coding
ENST00000441626 (CNBP-009) 129170102-129183910 protein_coding
ENST00000446936 (CNBP-011) 129169487-129183899 protein_coding
ENST00000451728 (CNBP-010) 129169487-129183899 protein_coding
ENST00000500450 (CNBP-004) 129169569-129183910 protein_coding
ENST00000502372 (CNBP-006) 129170232-129183864 retained_intron
ENST00000502976 (CNBP-002) 129169484-129183905 protein_coding
ENST00000504813 (CNBP-003) 129169569-129183922 protein_coding
ENST00000507573 (CNBP-005) 129171252-129183896 retained_intron
ENST00000512338 (CNBP-008) 129171168-129183922 protein_coding
ENSG00000240682 (ISY1)
ISY1 splicing factor homolog (S. cerevisiae) 		ENST00000273541 (ISY1-004) 129129374-129161048 protein_coding
ENST00000393292 (ISY1-002) 129130017-129161037 protein_coding
ENST00000393295 (ISY1-001) 129127415-129161293 protein_coding
ENST00000471306 (ISY1-007) 129129791-129130703 retained_intron
ENST00000471497 (ISY1-005) 129129374-129156889 processed_transcript
ENST00000485703 (ISY1-003) 129134075-129161028 nonsense_mediated_decay
ENST00000496163 (ISY1-006) 129129879-129145874 protein_coding
ENSG00000261796 (ISY1-RAB43)
ISY1-RAB43 readthrough 		ENST00000418265 (ISY1-RAB43-001) 129087575-129161036 protein_coding
ENSG00000273437 (RP11-434H6.7)
 ENST00000609183 (RP11-434H6.7-001) 129163606-129163940 lincRNA
CIL_00007J_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030056-ENSMUSG00000030057 CGP 10090 6:87818447-87851106
GeneTranscriptPositionBiotype
ENSMUSG00000030056 (Isy1)
ISY1 splicing factor homolog (S. cerevisiae) 		ENSMUST00000089497 (Isy1-201) 87818447-87838759 protein_coding
ENSMUSG00000030057 (Cnbp)
cellular nucleic acid binding protein 		ENSMUST00000032138 (Cnbp-201) 87842615-87851106 protein_coding
ENSMUST00000113617 (Cnbp-002) 87845098-87851060 protein_coding
ENSMUST00000113619 (Cnbp-001) 87843082-87851106 protein_coding
ENSMUST00000134851 (Cnbp-003) 87844000-87850994 retained_intron
ENSMUST00000141961 (Cnbp-004) 87843919-87851027 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00007J_0001ENSDARG00000063466ENSDART00000093148ENSDART00000156205ENSDARG00000070922ENSDART00000104520ENSDART00000154888CIL_00007J_0002ENSG00000169714ENST00000422453ENST00000441626ENST00000446936ENST00000451728ENST00000500450ENST00000502372ENST00000502976ENST00000504813ENST00000507573ENST00000512338ENSG00000240682ENST00000273541ENST00000393292ENST00000393295ENST00000471306ENST00000471497ENST00000485703ENST00000496163ENSG00000261796ENST00000418265ENSG00000273437ENST00000609183CIL_00007J_0003ENSMUSG00000030056ENSMUST00000089497ENSMUSG00000030057ENSMUST00000032138ENSMUST00000113617ENSMUST00000113619ENSMUST00000134851ENSMUST00000141961
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00007J_0001ENSDARG00000063466ENSDART00000093148ENSDARG00000070922ENSDART00000104520CIL_00007J_0002ENSG00000169714ENST00000422453ENST00000441626ENST00000451728ENST00000500450ENST00000502372ENST00000502976ENST00000504813ENSG00000240682ENST00000273541ENST00000393292ENST00000393295ENST00000471306ENST00000485703ENSG00000261796ENST00000418265ENSG00000273437ENST00000609183CIL_00007J_0003ENSMUSG00000030056ENSMUST00000089497ENSMUSG00000030057ENSMUST00000032138ENSMUST00000113617ENSMUST00000113619ENSMUST00000141961
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000063466 ENSDART00000093148 N/A N/A N/A 3.427±0.45 N/A N/A 6.977±3.69 7.545±0.65 1.168±0.00 N/A 1.701±0.00 N/A N/A N/A
ENSDART00000156205 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000070922 ENSDART00000104520 N/A N/A N/A 56.923±39.84 N/A N/A 155.183±0.00 N/A 11.242±0.00 N/A 142.000±0.00 N/A N/A N/A
ENSDART00000154888 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000169714 ENST00000422453 N/A N/A 7.922±0.00 18.242±0.00 18.046±1.78 16.628±0.00 20.419±0.00 32.047±0.00 36.689±0.00 19.481±0.00 67.115±0.00 41.161±22.99 29.736±0.00 N/A
ENST00000441626 N/A N/A N/A N/A N/A N/A 55.919±0.00 N/A N/A 84.626±0.00 87.673±0.00 N/A N/A N/A
ENST00000446936 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000451728 56.798±0.00 63.159±0.00 3.816±0.00 23.684±14.28 29.733±14.37 31.680±22.62 25.459±18.39 13.923±5.14 17.970±7.97 60.158±0.00 86.695±0.00 32.531±14.81 23.359±1.29 55.357±0.00
ENST00000500450 N/A N/A N/A N/A N/A 71.328±0.00 69.835±0.00 54.444±0.00 20.433±0.00 102.979±0.00 125.284±0.00 N/A N/A 37.390±0.00
ENST00000502372 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.468±0.00
ENST00000502976 87.162±0.00 90.686±0.00 12.983±0.00 52.583±22.30 33.279±11.64 46.273±27.38 33.506±18.83 27.802±5.50 24.535±11.09 45.950±22.92 70.304±31.56 50.079±13.64 40.517±10.99 54.732±23.32
ENST00000504813 N/A 26.141±0.00 N/A 23.293±0.00 18.376±0.00 N/A N/A N/A 14.784±0.00 N/A N/A 38.916±0.00 48.586±0.00 26.091±0.00
ENST00000507573 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000240682 ENST00000273541 7.385±0.00 10.609±0.00 1.643±0.00 2.212±0.19 4.685±1.70 3.805±2.85 2.191±1.45 6.740±0.00 0.968±0.00 3.382±2.20 2.661±0.86 5.255±1.92 9.464±1.49 7.264±0.00
ENST00000393292 5.679±0.00 N/A N/A 2.240±1.35 3.642±0.00 6.582±4.29 2.007±1.17 N/A 2.467±0.00 N/A 3.176±1.75 7.755±4.52 N/A 7.233±0.00
ENST00000393295 2.242±0.00 4.096±0.00 N/A 1.103±0.87 3.503±0.00 1.672±1.09 0.614±0.41 1.688±1.03 1.199±0.00 1.671±0.97 0.979±0.00 3.457±1.28 3.182±0.67 2.731±0.19
ENST00000471306 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.351±0.00 24.682±0.00 N/A
ENST00000471497 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485703 N/A N/A 2.307±0.00 1.120±0.00 N/A N/A N/A N/A 4.303±0.00 3.008±0.00 N/A 9.856±4.51 20.158±0.00 12.667±0.00
ENST00000496163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000261796 ENST00000418265 1.871±0.00 4.421±0.00 0.854±0.00 1.144±0.75 1.656±0.22 1.601±0.06 0.854±0.53 2.121±0.07 1.898±1.11 2.747±1.62 N/A 6.065±1.48 4.801±0.46 3.627±0.47
ENSG00000273437 ENST00000609183 1.612±0.00 4.367±0.00 N/A 4.599±2.70 1.250±0.00 0.443±0.00 0.914±0.00 1.263±0.00 1.498±0.87 2.273±0.00 3.719±0.00 4.779±4.08 0.672±0.32 1.111±0.73
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030056 ENSMUST00000089497 8.324±2.38 7.910±1.91 11.356±1.05 8.404±2.56 8.911±4.03 7.536±0.91 3.980±0.63 7.652±0.59 13.229±10.19 9.412±1.25 6.441±0.70 11.111±4.34 16.059±5.26 4.790±2.42
ENSMUSG00000030057 ENSMUST00000032138 20.000±1.56 16.122±0.20 18.954±0.00 8.851±0.00 N/A 10.590±0.40 12.014±0.00 10.827±1.00 14.923±4.01 15.422±1.71 N/A 20.852±8.19 14.394±5.59 10.232±3.23
ENSMUST00000113617 N/A 13.321±0.26 N/A 78.742±0.00 N/A N/A N/A N/A N/A N/A N/A 76.045±45.68 87.886±26.58 27.868±0.00
ENSMUST00000113619 58.724±4.69 28.077±6.01 94.045±25.42 60.276±14.93 46.638±5.41 34.049±6.77 57.876±15.36 44.675±11.42 84.916±41.90 55.879±3.74 194.037±63.88 74.821±29.67 135.373±45.31 23.989±6.23
ENSMUST00000134851 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141961 43.601±3.83 25.676±1.70 N/A 26.223±0.00 35.626±10.14 27.970±8.26 31.807±0.45 44.579±2.89 26.722±5.37 36.739±4.41 N/A N/A N/A 7.338±0.00

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