C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ISY1 splicing factor homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000273541 ISY1-004 ENSG00000240682 9606 - 3:129129374-129161048 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000273541
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000273541 7.385±0.00 10.609±0.00 1.643±0.00 2.212±0.19 4.685±1.70 3.805±2.85 2.191±1.45 6.740±0.00 0.968±0.00 3.382±2.20 2.661±0.86 5.255±1.92 9.464±1.49 7.264±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000311 CIL_000311_0001 CGP 3:129087569-129161036
CIL_00007J CIL_00007J_0002 CGP 3:129127415-129183922

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000089497 Isy1-201 protein_coding Mus_musculus 0 534
ENSDART00000093148 rab43-001 protein_coding Danio_rerio 0 335
ENSDART00000156205 rab43-002 retained_intron Danio_rerio 6e-37 159

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