C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ets variant 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000244405 ETV5 9606 - 3:186046308-186110318 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000306376 ETV5-001 186046308-186109112 protein_coding
  ENST00000413301 ETV5-005 186080070-186108929 protein_coding
  ENST00000421809 ETV5-007 186080047-186108999 protein_coding
  ENST00000422039 ETV5-006 186081124-186108550 protein_coding
  ENST00000433149 ETV5-011 186048815-186065970 nonsense_mediated_decay
  ENST00000434744 ETV5-002 186048252-186108675 protein_coding
  ENST00000440773 ETV5-003 186080017-186110318 protein_coding
  ENST00000472868 ETV5-014 186066005-186105942 processed_transcript
  ENST00000475484 ETV5-008 186104926-186105490 retained_intron
  ENST00000476890 ETV5-004 186095120-186109081 processed_transcript
  ENST00000480706 ETV5-012 186048582-186064560 processed_transcript
  ENST00000484223 ETV5-009 186064443-186079105 processed_transcript
  ENST00000489830 ETV5-010 186064213-186079906 processed_transcript
  ENST00000495808 ETV5-013 186105410-186105724 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000306376ENST00000421809ENST00000434744
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000306376 4.079±0.00 3.508±0.00 N/A 6.005±0.87 2.930±0.00 1.117±0.79 2.056±0.00 0.571±0.00 1.031±0.00 4.782±0.73 4.250±0.00 1.253±0.55 11.035±2.92 6.393±1.54
ENST00000421809 N/A N/A N/A N/A N/A 2.359±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434744 N/A N/A 0.452±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZT CIL_0008ZT_0001 VISTA 3:185444884-186046681
CIL_0006RI CIL_0006RI_0001 CGP 3:185915906-186110318
CIL_0006RL CIL_0006RL_0001 CGP 3:186046308-186362237

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000977 IMP RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001228 IMP RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 TAS DNA binding
GO:0003700 IEA:IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA:IDA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0007274 IEA neuromuscular synaptic transmission
GO:0007626 IEA locomotory behavior
GO:0030154 IBA cell differentiation
GO:0034599 IDA cellular response to oxidative stress
GO:0043565 IEA sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045666 IEA positive regulation of neuron differentiation
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0048133 IEA male germ-line stem cell asymmetric division
GO:0050807 IEA regulation of synapse organization
GO:0060252 IEA positive regulation of glial cell proliferation
GO:0060762 IEA regulation of branching involved in mammary gland duct morphogenesis
GO:0071340 IEA skeletal muscle acetylcholine-gated channel clustering

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044511 etv5b ets variant 5b protein_coding Danio_rerio
ENSDARG00000069763 etv5a ets variant 5a protein_coding Danio_rerio
ENSMUSG00000013089 Etv5 ets variant 5 protein_coding Mus_musculus

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