C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ets variant 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000306376 ETV5-001 ENSG00000244405 9606 - 3:186046308-186109112 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000306376
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000306376 4.079±0.00 3.508±0.00 6.005±0.87 2.930±0.00 1.117±0.79 2.056±0.00 0.571±0.00 1.031±0.00 4.782±0.73 4.250±0.00 1.253±0.55 11.035±2.92 6.393±1.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZT CIL_0008ZT_0001 VISTA 3:185444884-186046681
CIL_0006RI CIL_0006RI_0001 CGP 3:185915906-186110318
CIL_0006RL CIL_0006RL_0001 CGP 3:186046308-186362237

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IMP RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001228 IMP RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 TAS DNA binding
GO:0003700 IEA:IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA:IDA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0007274 IEA neuromuscular synaptic transmission
GO:0007626 IEA locomotory behavior
GO:0030154 IBA cell differentiation
GO:0034599 IDA cellular response to oxidative stress
GO:0043565 IEA sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045666 IEA positive regulation of neuron differentiation
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0048133 IEA male germ-line stem cell asymmetric division
GO:0050807 IEA regulation of synapse organization
GO:0060252 IEA positive regulation of glial cell proliferation
GO:0060762 IEA regulation of branching involved in mammary gland duct morphogenesis
GO:0071340 IEA skeletal muscle acetylcholine-gated channel clustering

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079601 Etv5-001 protein_coding Mus_musculus 0 2303
ENSMUST00000168774 Etv5-002 protein_coding Mus_musculus 0 1917
ENSMUST00000170393 Etv5-003 protein_coding Mus_musculus 0 460
ENSMUST00000170803 Etv5-005 nonsense_mediated_decay Mus_musculus 0 302
ENSMUST00000165506 Etv5-004 processed_transcript Mus_musculus 4e-27 128

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