C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin-conjugating enzyme E2 variant 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000244687 UBE2V1 9606 - 20:50081124-50115959 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000340309 UBE2V1-003 50081124-50115954 protein_coding
  ENST00000371657 UBE2V1-005 50081124-50113139 protein_coding
  ENST00000371674 UBE2V1-004 50081124-50113173 protein_coding
  ENST00000371677 UBE2V1-002 50081124-50115954 protein_coding
  ENST00000396059 UBE2V1-010 50081124-50113172 processed_transcript
  ENST00000415862 UBE2V1-001 50081124-50115954 protein_coding
  ENST00000420027 UBE2V1-201 50081124-50084751 protein_coding
  ENST00000432266 UBE2V1-016 50084148-50113145 processed_transcript
  ENST00000461960 UBE2V1-006 50095790-50113125 processed_transcript
  ENST00000462217 UBE2V1-008 50095790-50115949 processed_transcript
  ENST00000467839 UBE2V1-020 50083878-50113146 retained_intron
  ENST00000468926 UBE2V1-014 50114945-50115959 processed_transcript
  ENST00000470565 UBE2V1-009 50094915-50113165 processed_transcript
  ENST00000472923 UBE2V1-015 50084127-50113167 processed_transcript
  ENST00000473860 UBE2V1-018 50096059-50111566 processed_transcript
  ENST00000483534 UBE2V1-007 50082560-50115957 nonsense_mediated_decay
  ENST00000486653 UBE2V1-017 50082796-50113136 processed_transcript
  ENST00000490289 UBE2V1-011 50094944-50113146 processed_transcript
  ENST00000490555 UBE2V1-012 50082857-50113133 retained_intron
  ENST00000492371 UBE2V1-013 50082768-50115954 processed_transcript
  ENST00000493090 UBE2V1-019 50083732-50113146 retained_intron
  ENST00000557021 UBE2V1-202 50081124-50113198 protein_coding
  ENST00000617119 UBE2V1-203 50081124-50113198 protein_coding
  ENST00000625172 UBE2V1-204 50081124-50113198 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000371657ENST00000371674ENST00000371677ENST00000396059ENST00000420027ENST00000467839
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000371657 N/A 13.240±0.00 N/A N/A 10.057±0.00 N/A N/A 7.115±0.00 5.303±0.00 8.707±0.00 7.066±0.00 38.910±0.00 19.891±0.00 23.284±0.00
ENST00000371674 37.523±0.00 19.923±0.00 5.811±0.00 27.635±0.69 18.472±5.67 17.003±10.11 20.785±15.52 17.196±4.59 12.265±2.13 14.254±7.84 6.750±3.18 31.607±8.93 53.277±5.82 37.428±8.90
ENST00000371677 N/A N/A 2.014±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000396059 18.728±0.00 13.121±0.00 N/A N/A N/A 9.212±0.00 N/A 7.355±0.00 6.875±0.00 N/A N/A N/A N/A N/A
ENST00000420027 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.258±0.00 N/A N/A N/A
ENST00000467839 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 31.247±0.00 43.579±0.00 29.875±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087E CIL_00087E_0001 VISTA 20:49719805-50323644
CIL_0001TN CIL_0001TN_0001 CGP 20:49982999-50115959
CIL_0001PF CIL_0001PF_0001 CGP 20:50081124-50153637
CIL_00079R CIL_00079R_0001 CGP 20:50081124-50153734

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000151 IDA ubiquitin ligase complex
GO:0000209 TAS protein polyubiquitination
GO:0002224 TAS toll-like receptor signaling pathway
GO:0002755 TAS MyD88-dependent toll-like receptor signaling pathway
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006282 TAS regulation of DNA repair
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0016881 IEA acid-amino acid ligase activity
GO:0030154 NAS cell differentiation
GO:0031371 IDA ubiquitin conjugating enzyme complex
GO:0031624 IEA ubiquitin conjugating enzyme binding
GO:0034134 TAS toll-like receptor 2 signaling pathway
GO:0034142 TAS toll-like receptor 4 signaling pathway
GO:0034146 TAS toll-like receptor 5 signaling pathway
GO:0034162 TAS toll-like receptor 9 signaling pathway
GO:0034166 TAS toll-like receptor 10 signaling pathway
GO:0035370 IDA UBC13-UEV1A complex
GO:0035872 TAS nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway
GO:0038095 TAS Fc-epsilon receptor signaling pathway
GO:0038123 TAS toll-like receptor TLR1:TLR2 signaling pathway
GO:0038124 TAS toll-like receptor TLR6:TLR2 signaling pathway
GO:0042275 IEA error-free postreplication DNA repair
GO:0043123 IMP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043234 IDA protein complex
GO:0045087 TAS innate immune response
GO:0045893 TAS positive regulation of transcription, DNA-templated
GO:0050852 TAS T cell receptor signaling pathway
GO:0051092 IMP positive regulation of NF-kappaB transcription factor activity
GO:0070062 IDA extracellular vesicular exosome
GO:0070423 TAS nucleotide-binding oligomerization domain containing signaling pathway
GO:0070534 IDA protein K63-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041875 ube2v1 ubiquitin-conjugating enzyme E2 variant 1 protein_coding Danio_rerio
ENSMUSG00000078923 Ube2v1 ubiquitin-conjugating enzyme E2 variant 1 protein_coding Mus_musculus

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