C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: colorectal neoplasia differentially expressed (non-protein coding)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000245694 CRNDE 9606 - 16:54918863-54929189 lincRNA
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000501177 CRNDE-002 54918863-54928551 lincRNA
  ENST00000502066 CRNDE-003 54918870-54928796 lincRNA
  ENST00000557792 CRNDE-005 54925153-54929189 lincRNA
  ENST00000558031 CRNDE-009 54919054-54923779 lincRNA
  ENST00000558952 CRNDE-004 54923281-54928886 lincRNA
  ENST00000559432 CRNDE-007 54919066-54928716 lincRNA
  ENST00000559598 CRNDE-001 54918864-54928551 lincRNA
  ENST00000560029 CRNDE-010 54918870-54920616 lincRNA
  ENST00000560208 CRNDE-006 54924859-54929149 lincRNA
  ENST00000560912 CRNDE-008 54919173-54928812 lincRNA

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000501177ENST00000502066ENST00000558031ENST00000558952ENST00000559432ENST00000559598ENST00000560029ENST00000560208ENST00000560912
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000501177 1.218±0.00 N/A N/A 0.117±0.01 1.113±0.00 N/A 2.729±0.00 N/A 0.142±0.07 N/A 0.899±0.00 1.197±0.00 0.670±0.44 N/A
ENST00000502066 3.141±0.00 0.955±0.00 N/A N/A 5.455±0.00 N/A 2.494±1.56 2.353±0.00 0.041±0.00 4.633±0.00 N/A 3.975±1.99 0.592±0.41 36.746±2.59
ENST00000558031 N/A 0.811±0.00 0.295±0.00 N/A N/A N/A N/A 1.036±0.00 N/A N/A N/A 3.940±0.00 0.250±0.00 N/A
ENST00000558952 N/A 0.375±0.00 N/A 0.097±0.00 N/A N/A 1.175±0.00 N/A 0.494±0.00 N/A N/A N/A 0.516±0.28 N/A
ENST00000559432 N/A N/A N/A N/A 4.018±0.00 0.051±0.00 3.986±0.00 1.120±0.00 N/A 2.233±0.00 N/A N/A N/A 42.351±0.00
ENST00000559598 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.806±0.00 N/A N/A 0.656±0.00 41.889±0.00
ENST00000560029 N/A N/A N/A 0.167±0.06 N/A N/A N/A 0.436±0.00 N/A N/A 1.935±0.00 N/A N/A N/A
ENST00000560208 N/A N/A N/A N/A N/A N/A 0.675±0.00 N/A 0.112±0.00 N/A N/A N/A N/A N/A
ENST00000560912 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.459±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0002 UCNEbase 16:51906374-55391377
CIL_0006IA CIL_0006IA_0001 CGP 16:54283304-54934485
CIL_0008ZD CIL_0008ZD_0001 VISTA 16:54323270-54924405
CIL_0008ZG CIL_0008ZG_0001 VISTA 16:54331417-54933346
CIL_0008ZF CIL_0008ZF_0001 VISTA 16:54345555-54946447
CIL_0008ZB CIL_0008ZB_0001 VISTA 16:54450731-55051703
CIL_0008ZC CIL_0008ZC_0001 VISTA 16:54465190-55066248
CIL_000986 CIL_000986_0001 VISTA 16:54740448-55341163
CIL_000989 CIL_000989_0001 VISTA 16:54745325-55346517
CIL_00098A CIL_00098A_0001 VISTA 16:54889273-55490371
CIL_000987 CIL_000987_0001 VISTA 16:54906681-55507962

Gene Ontology
No GO terms available.

Homologs

No Homologs available.

Loading