C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000989_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs27 VISTA 9606 16:54745325-55346517
GeneTranscriptPositionBiotype
ENSG00000159387 (IRX6)
iroquois homeobox 6 		ENST00000290552 (IRX6-001) 55323760-55330760 protein_coding
ENST00000558315 (IRX6-002) 55325800-55327796 processed_transcript
ENSG00000176842 (IRX5)
iroquois homeobox 5 		ENST00000320990 (IRX5-002) 54931199-54934485 protein_coding
ENST00000394636 (IRX5-001) 54930862-54934485 protein_coding
ENST00000558597 (IRX5-004) 54932072-54934069 protein_coding
ENST00000560154 (IRX5-003) 54931199-54933960 protein_coding
ENST00000620085 (IRX5-201) 54931199-54933960 protein_coding
ENSG00000239555 (RN7SL841P)
RNA, 7SL, cytoplasmic 841, pseudogene 		ENST00000470547 (RN7SL841P-201) 55291379-55291675 misc_RNA
ENSG00000245694 (CRNDE)
colorectal neoplasia differentially expressed (non-protein coding) 		ENST00000501177 (CRNDE-002) 54918863-54928551 lincRNA
ENST00000502066 (CRNDE-003) 54918870-54928796 lincRNA
ENST00000557792 (CRNDE-005) 54925153-54929189 lincRNA
ENST00000558031 (CRNDE-009) 54919054-54923779 lincRNA
ENST00000558952 (CRNDE-004) 54923281-54928886 lincRNA
ENST00000559432 (CRNDE-007) 54919066-54928716 lincRNA
ENST00000559598 (CRNDE-001) 54918864-54928551 lincRNA
ENST00000560029 (CRNDE-010) 54918870-54920616 lincRNA
ENST00000560208 (CRNDE-006) 54924859-54929149 lincRNA
ENST00000560912 (CRNDE-008) 54919173-54928812 lincRNA
ENSG00000259283 (RP11-26L20.3)
 ENST00000558730 (RP11-26L20.3-001) 55259969-55333588 antisense
ENSG00000259711 (CTD-3032H12.2)
 ENST00000560487 (CTD-3032H12.2-001) 54934913-54954665 lincRNA
ENSG00000259725 (CTD-3032H12.1)
 ENST00000558156 (CTD-3032H12.1-002) 54938031-54938671 lincRNA
ENST00000559802 (CTD-3032H12.1-001) 54937786-54938671 lincRNA
ENSG00000261171 (RP11-1136G4.1)
 ENST00000561591 (RP11-1136G4.1-001) 54847247-54848233 lincRNA
ENSG00000263207 (RP11-26L20.4)
 ENST00000573934 (RP11-26L20.4-001) 55332355-55332967 lincRNA
ENSG00000273615 (RP11-1136G4.2)
 ENST00000613942 (RP11-1136G4.2-001) 54851640-54852733 lincRNA

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_000989_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs27 VISTA 10090 8:92149353-92750411
GeneTranscriptPositionBiotype
ENSMUSG00000031736 (Crnde)
colorectal neoplasia differentially expressed (non-protein coding) 		ENSMUST00000034183 (Crnde-001) 92326038-92356120 lincRNA
ENSMUST00000178064 (Crnde-002) 92326038-92346870 lincRNA
ENSMUST00000179029 (Crnde-007) 92326250-92355891 lincRNA
ENSMUST00000179222 (Crnde-004) 92346932-92355869 lincRNA
ENSMUST00000179400 (Crnde-005) 92344910-92346870 lincRNA
ENSMUST00000179421 (Crnde-003) 92326038-92355831 lincRNA
ENSMUST00000180102 (Crnde-006) 92336211-92355764 lincRNA
ENSMUSG00000031737 (Irx5)
Iroquois related homeobox 5 (Drosophila) 		ENSMUST00000034184 (Irx5-001) 92357796-92361456 protein_coding
ENSMUSG00000031738 (Irx6)
Iroquois related homeobox 6 (Drosophila) 		ENSMUST00000034185 (Irx6-001) 92674288-92680956 protein_coding
ENSMUST00000167261 (Irx6-002) 92674826-92680956 protein_coding
ENSMUSG00000078967 (Gm3272)
predicted pseudogene 3272 		ENSMUST00000181181 (Gm3272-001) 92715747-92716975 processed_pseudogene
ENSMUSG00000095651 (Gm21817)
predicted gene, 21817 		ENSMUST00000178584 (Gm21817-001) 92336668-92339250 lincRNA
ENSMUSG00000100612 (RP24-69M8.4)
predicted gene 29177 		ENSMUST00000187016 (RP24-69M8.4-001) 92365189-92365621 lincRNA

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000989_0001ENSG00000159387ENST00000290552ENST00000558315ENSG00000176842ENST00000320990ENST00000394636ENST00000558597ENST00000560154ENST00000620085ENSG00000239555ENST00000470547ENSG00000245694ENST00000501177ENST00000502066ENST00000557792ENST00000558031ENST00000558952ENST00000559432ENST00000559598ENST00000560029ENST00000560208ENST00000560912ENSG00000259283ENST00000558730ENSG00000259711ENST00000560487ENSG00000259725ENST00000558156ENST00000559802ENSG00000261171ENST00000561591ENSG00000263207ENST00000573934ENSG00000273615ENST00000613942CIL_000989_0002ENSMUSG00000031736ENSMUST00000034183ENSMUST00000178064ENSMUST00000179029ENSMUST00000179222ENSMUST00000179400ENSMUST00000179421ENSMUST00000180102ENSMUSG00000031737ENSMUST00000034184ENSMUSG00000031738ENSMUST00000034185ENSMUST00000167261ENSMUSG00000078967ENSMUST00000181181ENSMUSG00000095651ENSMUST00000178584ENSMUSG00000100612ENSMUST00000187016
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000159387 ENST00000290552 4.461±0.00 0.081±0.00 0.183±0.00 0.013±0.00 8.555±8.29 0.413±0.38 1.912±1.87 0.966±0.00 0.025±0.00 0.269±0.26 1.161±0.00 0.080±0.05 0.070±0.02 0.052±0.00
ENST00000558315 N/A N/A 0.233±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.033±0.00 N/A N/A
ENSG00000176842 ENST00000320990 N/A 0.122±0.00 N/A N/A 0.743±0.00 N/A N/A N/A 0.261±0.00 N/A N/A 0.173±0.00 N/A 0.263±0.00
ENST00000394636 0.441±0.00 0.186±0.00 0.612±0.00 0.053±0.00 0.448±0.01 N/A 1.679±0.13 1.499±0.00 N/A 0.779±0.00 0.808±0.46 0.201±0.00 N/A N/A
ENST00000558597 N/A N/A N/A N/A 1.273±0.00 N/A 1.091±0.00 0.836±0.00 N/A 0.744±0.00 1.170±0.00 0.836±0.91 0.218±0.17 2.687±0.00
ENST00000560154 N/A N/A N/A N/A 1.996±0.00 N/A 3.642±0.00 1.503±0.86 N/A N/A N/A 0.207±0.00 N/A N/A
ENST00000620085 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.711±0.00 N/A 0.270±0.00 N/A N/A
ENSG00000239555 ENST00000470547 N/A N/A N/A N/A N/A N/A N/A 0.064±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000245694 ENST00000501177 1.218±0.00 N/A N/A 0.117±0.01 1.113±0.00 N/A 2.729±0.00 N/A 0.142±0.07 N/A 0.899±0.00 1.197±0.00 0.670±0.44 N/A
ENST00000502066 3.141±0.00 0.955±0.00 N/A N/A 5.455±0.00 N/A 2.494±1.56 2.353±0.00 0.041±0.00 4.633±0.00 N/A 3.975±1.99 0.592±0.41 36.746±2.59
ENST00000557792 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558031 N/A 0.811±0.00 0.295±0.00 N/A N/A N/A N/A 1.036±0.00 N/A N/A N/A 3.940±0.00 0.250±0.00 N/A
ENST00000558952 N/A 0.375±0.00 N/A 0.097±0.00 N/A N/A 1.175±0.00 N/A 0.494±0.00 N/A N/A N/A 0.516±0.28 N/A
ENST00000559432 N/A N/A N/A N/A 4.018±0.00 0.051±0.00 3.986±0.00 1.120±0.00 N/A 2.233±0.00 N/A N/A N/A 42.351±0.00
ENST00000559598 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.806±0.00 N/A N/A 0.656±0.00 41.889±0.00
ENST00000560029 N/A N/A N/A 0.167±0.06 N/A N/A N/A 0.436±0.00 N/A N/A 1.935±0.00 N/A N/A N/A
ENST00000560208 N/A N/A N/A N/A N/A N/A 0.675±0.00 N/A 0.112±0.00 N/A N/A N/A N/A N/A
ENST00000560912 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.459±0.00 N/A
ENSG00000259283 ENST00000558730 N/A N/A N/A N/A N/A N/A N/A 0.054±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000259711 ENST00000560487 N/A N/A N/A N/A 0.279±0.00 N/A 0.097±0.00 0.167±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000259725 ENST00000558156 N/A N/A N/A N/A 0.748±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559802 0.132±0.00 N/A N/A N/A 0.083±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000261171 ENST00000561591 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.188±3.44
ENSG00000263207 ENST00000573934 N/A N/A N/A N/A 0.112±0.00 0.232±0.00 0.033±0.00 0.035±0.00 N/A N/A N/A N/A N/A 0.065±0.00
ENSG00000273615 ENST00000613942 0.045±0.00 0.097±0.00 N/A 0.046±0.00 0.176±0.00 0.068±0.00 0.323±0.30 0.064±0.00 N/A 0.105±0.07 N/A 0.083±0.00 0.046±0.00 0.198±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031736 ENSMUST00000034183 0.079±0.03 N/A N/A 1.974±1.35 1.095±0.52 0.094±0.02 0.139±0.00 0.262±0.10 N/A 2.341±0.65 0.221±0.07 1.054±0.67 0.314±0.00 10.715±1.56
ENSMUST00000178064 0.145±0.08 N/A N/A 0.394±0.00 N/A 0.250±0.00 0.285±0.02 N/A 0.419±0.19 3.075±0.00 0.552±0.16 2.571±0.40 0.365±0.22 7.550±0.29
ENSMUST00000179029 N/A 1.276±0.00 N/A 0.828±0.00 N/A N/A 0.901±0.16 N/A N/A N/A 0.462±0.00 1.413±0.00 N/A N/A
ENSMUST00000179222 0.251±0.09 2.032±1.12 N/A N/A 1.438±0.51 0.199±0.07 1.138±0.40 0.579±0.00 1.886±0.12 3.591±0.00 0.540±0.00 2.860±1.31 0.761±0.30 N/A
ENSMUST00000179400 N/A N/A N/A N/A N/A N/A N/A N/A 0.147±0.00 N/A 0.113±0.00 N/A N/A N/A
ENSMUST00000179421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.117±0.00 N/A
ENSMUST00000180102 0.158±0.09 N/A N/A 0.118±0.00 N/A N/A 0.282±0.00 N/A N/A N/A 0.375±0.00 N/A 0.154±0.09 N/A
ENSMUSG00000031737 ENSMUST00000034184 0.069±0.03 2.745±0.75 0.098±0.02 6.357±4.63 5.493±2.43 0.021±0.01 2.367±0.60 2.027±0.44 0.035±0.02 15.318±2.20 0.221±0.20 4.019±0.91 0.192±0.14 4.143±1.58
ENSMUSG00000031738 ENSMUST00000034185 N/A N/A N/A 0.575±0.36 0.031±0.02 0.041±0.01 N/A N/A N/A N/A N/A N/A 0.010±0.00 0.046±0.00
ENSMUST00000167261 N/A N/A N/A 0.194±0.04 N/A 0.058±0.03 0.013±0.00 N/A 0.014±0.01 0.017±0.01 N/A N/A 0.002±0.00 0.067±0.01
ENSMUSG00000078967 ENSMUST00000181181 0.326±0.04 0.694±0.15 0.213±0.05 1.534±1.43 0.369±0.17 0.265±0.14 0.430±0.13 0.735±0.15 0.428±0.36 0.432±0.06 0.998±0.23 0.430±0.23 0.273±0.18 0.426±0.03
ENSMUSG00000095651 ENSMUST00000178584 0.077±0.04 0.147±0.09 0.024±0.00 0.228±0.12 0.226±0.14 0.034±0.00 0.088±0.01 0.062±0.02 0.100±0.04 0.604±0.22 0.044±0.00 0.201±0.11 0.048±0.03 0.717±0.28
ENSMUSG00000100612 ENSMUST00000187016 N/A N/A N/A 0.030±0.00 0.137±0.00 N/A N/A 0.128±0.01 N/A 0.460±0.23 N/A 0.237±0.00 N/A 0.118±0.00

Loading