C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008ZD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs36 VISTA 9606 16:54323270-54924405
GeneTranscriptPositionBiotype
ENSG00000245694 (CRNDE)
colorectal neoplasia differentially expressed (non-protein coding) 		ENST00000501177 (CRNDE-002) 54918863-54928551 lincRNA
ENST00000502066 (CRNDE-003) 54918870-54928796 lincRNA
ENST00000557792 (CRNDE-005) 54925153-54929189 lincRNA
ENST00000558031 (CRNDE-009) 54919054-54923779 lincRNA
ENST00000558952 (CRNDE-004) 54923281-54928886 lincRNA
ENST00000559432 (CRNDE-007) 54919066-54928716 lincRNA
ENST00000559598 (CRNDE-001) 54918864-54928551 lincRNA
ENST00000560029 (CRNDE-010) 54918870-54920616 lincRNA
ENST00000560208 (CRNDE-006) 54924859-54929149 lincRNA
ENST00000560912 (CRNDE-008) 54919173-54928812 lincRNA
ENSG00000261171 (RP11-1136G4.1)
 ENST00000561591 (RP11-1136G4.1-001) 54847247-54848233 lincRNA
ENSG00000264079 (AC079412.1)
 ENST00000579890 (AC079412.1-201) 54549303-54549396 miRNA
ENSG00000273615 (RP11-1136G4.2)
 ENST00000613942 (RP11-1136G4.2-001) 54851640-54852733 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0008ZD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs36 VISTA 10090 8:91800436-92401518
GeneTranscriptPositionBiotype
ENSMUSG00000031734 (Irx3)
Iroquois related homeobox 3 		ENSMUST00000093312 (Irx3-002) 91798525-91801915 protein_coding
ENSMUST00000175795 (Irx3-001) 91798525-91801916 protein_coding
ENSMUSG00000031736 (Crnde)
colorectal neoplasia differentially expressed (non-protein coding) 		ENSMUST00000034183 (Crnde-001) 92326038-92356120 lincRNA
ENSMUST00000178064 (Crnde-002) 92326038-92346870 lincRNA
ENSMUST00000179029 (Crnde-007) 92326250-92355891 lincRNA
ENSMUST00000179222 (Crnde-004) 92346932-92355869 lincRNA
ENSMUST00000179400 (Crnde-005) 92344910-92346870 lincRNA
ENSMUST00000179421 (Crnde-003) 92326038-92355831 lincRNA
ENSMUST00000180102 (Crnde-006) 92336211-92355764 lincRNA
ENSMUSG00000031737 (Irx5)
Iroquois related homeobox 5 (Drosophila) 		ENSMUST00000034184 (Irx5-001) 92357796-92361456 protein_coding
ENSMUSG00000095651 (Gm21817)
predicted gene, 21817 		ENSMUST00000178584 (Gm21817-001) 92336668-92339250 lincRNA
ENSMUSG00000099664 (RP23-382M10.2)
predicted gene 28511 		ENSMUST00000191594 (RP23-382M10.2-001) 91865871-91872995 lincRNA
ENSMUSG00000099812 (RP24-173E19.1)
predicted gene 28515 		ENSMUST00000189823 (RP24-173E19.1-001) 91907565-91913066 lincRNA
ENSMUSG00000100612 (RP24-69M8.4)
predicted gene 29177 		ENSMUST00000187016 (RP24-69M8.4-001) 92365189-92365621 lincRNA
ENSMUSG00000101613 (RP24-486I4.1)
predicted gene 28516 		ENSMUST00000190257 (RP24-486I4.1-001) 92024442-92038438 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008ZD_0001ENSG00000245694ENST00000501177ENST00000502066ENST00000557792ENST00000558031ENST00000558952ENST00000559432ENST00000559598ENST00000560029ENST00000560208ENST00000560912ENSG00000261171ENST00000561591ENSG00000264079ENST00000579890ENSG00000273615ENST00000613942CIL_0008ZD_0002ENSMUSG00000031734ENSMUST00000093312ENSMUST00000175795ENSMUSG00000031736ENSMUST00000034183ENSMUST00000178064ENSMUST00000179029ENSMUST00000179222ENSMUST00000179400ENSMUST00000179421ENSMUST00000180102ENSMUSG00000031737ENSMUST00000034184ENSMUSG00000095651ENSMUST00000178584ENSMUSG00000099664ENSMUST00000191594ENSMUSG00000099812ENSMUST00000189823ENSMUSG00000100612ENSMUST00000187016ENSMUSG00000101613ENSMUST00000190257
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008ZD_0001ENSG00000245694ENST00000501177ENST00000502066ENST00000558031ENST00000558952ENST00000559432ENST00000559598ENST00000560029ENST00000560208ENST00000560912ENSG00000261171ENST00000561591ENSG00000264079ENST00000579890ENSG00000273615ENST00000613942CIL_0008ZD_0002ENSMUSG00000031734ENSMUST00000093312ENSMUST00000175795ENSMUSG00000031736ENSMUST00000034183ENSMUST00000178064ENSMUST00000179029ENSMUST00000179222ENSMUST00000179400ENSMUST00000179421ENSMUST00000180102ENSMUSG00000031737ENSMUST00000034184ENSMUSG00000095651ENSMUST00000178584ENSMUSG00000099664ENSMUST00000191594ENSMUSG00000099812ENSMUST00000189823ENSMUSG00000100612ENSMUST00000187016ENSMUSG00000101613ENSMUST00000190257
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000245694 ENST00000501177 1.218±0.00 N/A N/A 0.117±0.01 1.113±0.00 N/A 2.729±0.00 N/A 0.142±0.07 N/A 0.899±0.00 1.197±0.00 0.670±0.44 N/A
ENST00000502066 3.141±0.00 0.955±0.00 N/A N/A 5.455±0.00 N/A 2.494±1.56 2.353±0.00 0.041±0.00 4.633±0.00 N/A 3.975±1.99 0.592±0.41 36.746±2.59
ENST00000557792 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558031 N/A 0.811±0.00 0.295±0.00 N/A N/A N/A N/A 1.036±0.00 N/A N/A N/A 3.940±0.00 0.250±0.00 N/A
ENST00000558952 N/A 0.375±0.00 N/A 0.097±0.00 N/A N/A 1.175±0.00 N/A 0.494±0.00 N/A N/A N/A 0.516±0.28 N/A
ENST00000559432 N/A N/A N/A N/A 4.018±0.00 0.051±0.00 3.986±0.00 1.120±0.00 N/A 2.233±0.00 N/A N/A N/A 42.351±0.00
ENST00000559598 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.806±0.00 N/A N/A 0.656±0.00 41.889±0.00
ENST00000560029 N/A N/A N/A 0.167±0.06 N/A N/A N/A 0.436±0.00 N/A N/A 1.935±0.00 N/A N/A N/A
ENST00000560208 N/A N/A N/A N/A N/A N/A 0.675±0.00 N/A 0.112±0.00 N/A N/A N/A N/A N/A
ENST00000560912 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.459±0.00 N/A
ENSG00000261171 ENST00000561591 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.188±3.44
ENSG00000264079 ENST00000579890 0.185±0.00 N/A N/A 0.167±0.00 N/A N/A N/A 0.161±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000273615 ENST00000613942 0.045±0.00 0.097±0.00 N/A 0.046±0.00 0.176±0.00 0.068±0.00 0.323±0.30 0.064±0.00 N/A 0.105±0.07 N/A 0.083±0.00 0.046±0.00 0.198±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031734 ENSMUST00000093312 N/A N/A 0.248±0.00 N/A 0.072±0.00 0.037±0.02 N/A N/A 0.049±0.02 N/A 0.804±0.00 3.181±0.00 N/A 0.023±0.00
ENSMUST00000175795 1.325±0.84 8.292±1.53 0.237±0.00 7.284±4.65 6.159±3.26 0.048±0.03 6.080±2.49 13.075±2.07 0.057±0.03 31.280±3.66 1.219±0.30 12.258±3.86 18.088±10.70 0.085±0.04
ENSMUSG00000031736 ENSMUST00000034183 0.079±0.03 N/A N/A 1.974±1.35 1.095±0.52 0.094±0.02 0.139±0.00 0.262±0.10 N/A 2.341±0.65 0.221±0.07 1.054±0.67 0.314±0.00 10.715±1.56
ENSMUST00000178064 0.145±0.08 N/A N/A 0.394±0.00 N/A 0.250±0.00 0.285±0.02 N/A 0.419±0.19 3.075±0.00 0.552±0.16 2.571±0.40 0.365±0.22 7.550±0.29
ENSMUST00000179029 N/A 1.276±0.00 N/A 0.828±0.00 N/A N/A 0.901±0.16 N/A N/A N/A 0.462±0.00 1.413±0.00 N/A N/A
ENSMUST00000179222 0.251±0.09 2.032±1.12 N/A N/A 1.438±0.51 0.199±0.07 1.138±0.40 0.579±0.00 1.886±0.12 3.591±0.00 0.540±0.00 2.860±1.31 0.761±0.30 N/A
ENSMUST00000179400 N/A N/A N/A N/A N/A N/A N/A N/A 0.147±0.00 N/A 0.113±0.00 N/A N/A N/A
ENSMUST00000179421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.117±0.00 N/A
ENSMUST00000180102 0.158±0.09 N/A N/A 0.118±0.00 N/A N/A 0.282±0.00 N/A N/A N/A 0.375±0.00 N/A 0.154±0.09 N/A
ENSMUSG00000031737 ENSMUST00000034184 0.069±0.03 2.745±0.75 0.098±0.02 6.357±4.63 5.493±2.43 0.021±0.01 2.367±0.60 2.027±0.44 0.035±0.02 15.318±2.20 0.221±0.20 4.019±0.91 0.192±0.14 4.143±1.58
ENSMUSG00000095651 ENSMUST00000178584 0.077±0.04 0.147±0.09 0.024±0.00 0.228±0.12 0.226±0.14 0.034±0.00 0.088±0.01 0.062±0.02 0.100±0.04 0.604±0.22 0.044±0.00 0.201±0.11 0.048±0.03 0.717±0.28
ENSMUSG00000099664 ENSMUST00000191594 N/A N/A N/A N/A N/A N/A N/A 0.085±0.00 N/A 0.141±0.06 0.370±0.12 N/A 0.173±0.00 0.157±0.00
ENSMUSG00000099812 ENSMUST00000189823 N/A 0.067±0.00 N/A 0.013±0.00 N/A N/A 0.013±0.00 N/A 0.009±0.01 0.029±0.01 N/A 0.049±0.03 0.165±0.11 N/A
ENSMUSG00000100612 ENSMUST00000187016 N/A N/A N/A 0.030±0.00 0.137±0.00 N/A N/A 0.128±0.01 N/A 0.460±0.23 N/A 0.237±0.00 N/A 0.118±0.00
ENSMUSG00000101613 ENSMUST00000190257 N/A N/A N/A 0.031±0.00 N/A N/A N/A N/A 0.068±0.00 N/A N/A N/A N/A N/A

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