C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000987_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs25 VISTA 9606 16:54906681-55507962
GeneTranscriptPositionBiotype
ENSG00000087245 (MMP2)
matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase) 		ENST00000219070 (MMP2-001) 55478971-55506691 protein_coding
ENST00000437642 (MMP2-003) 55481557-55505759 protein_coding
ENST00000543485 (MMP2-002) 55480533-55505525 protein_coding
ENST00000564864 (MMP2-004) 55479998-55485776 protein_coding
ENST00000566564 (MMP2-005) 55505375-55506239 nonsense_mediated_decay
ENST00000568715 (MMP2-007) 55478830-55485352 protein_coding
ENST00000570283 (MMP2-006) 55488662-55502889 protein_coding
ENST00000570308 (MMP2-008) 55389700-55506237 protein_coding
ENSG00000159387 (IRX6)
iroquois homeobox 6 		ENST00000290552 (IRX6-001) 55323760-55330760 protein_coding
ENST00000558315 (IRX6-002) 55325800-55327796 processed_transcript
ENSG00000176842 (IRX5)
iroquois homeobox 5 		ENST00000320990 (IRX5-002) 54931199-54934485 protein_coding
ENST00000394636 (IRX5-001) 54930862-54934485 protein_coding
ENST00000558597 (IRX5-004) 54932072-54934069 protein_coding
ENST00000560154 (IRX5-003) 54931199-54933960 protein_coding
ENST00000620085 (IRX5-201) 54931199-54933960 protein_coding
ENSG00000239555 (RN7SL841P)
RNA, 7SL, cytoplasmic 841, pseudogene 		ENST00000470547 (RN7SL841P-201) 55291379-55291675 misc_RNA
ENSG00000245694 (CRNDE)
colorectal neoplasia differentially expressed (non-protein coding) 		ENST00000501177 (CRNDE-002) 54918863-54928551 lincRNA
ENST00000502066 (CRNDE-003) 54918870-54928796 lincRNA
ENST00000557792 (CRNDE-005) 54925153-54929189 lincRNA
ENST00000558031 (CRNDE-009) 54919054-54923779 lincRNA
ENST00000558952 (CRNDE-004) 54923281-54928886 lincRNA
ENST00000559432 (CRNDE-007) 54919066-54928716 lincRNA
ENST00000559598 (CRNDE-001) 54918864-54928551 lincRNA
ENST00000560029 (CRNDE-010) 54918870-54920616 lincRNA
ENST00000560208 (CRNDE-006) 54924859-54929149 lincRNA
ENST00000560912 (CRNDE-008) 54919173-54928812 lincRNA
ENSG00000259283 (RP11-26L20.3)
 ENST00000558730 (RP11-26L20.3-001) 55259969-55333588 antisense
ENSG00000259711 (CTD-3032H12.2)
 ENST00000560487 (CTD-3032H12.2-001) 54934913-54954665 lincRNA
ENSG00000259725 (CTD-3032H12.1)
 ENST00000558156 (CTD-3032H12.1-002) 54938031-54938671 lincRNA
ENST00000559802 (CTD-3032H12.1-001) 54937786-54938671 lincRNA
ENSG00000260135 (RP11-212I21.2)
 ENST00000565307 (RP11-212I21.2-002) 55429135-55444759 lincRNA
ENST00000569037 (RP11-212I21.2-001) 55427558-55462297 lincRNA
ENST00000620495 (RP11-212I21.2-003) 55426797-55427951 lincRNA
ENSG00000263207 (RP11-26L20.4)
 ENST00000573934 (RP11-26L20.4-001) 55332355-55332967 lincRNA
ENSG00000274508 (RP11-212I21.5)
 ENST00000611626 (RP11-212I21.5-001) 55425574-55426130 lincRNA
CIL_000987_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs25 VISTA 10090 8:92255075-92855722
GeneTranscriptPositionBiotype
ENSMUSG00000031736 (Crnde)
colorectal neoplasia differentially expressed (non-protein coding) 		ENSMUST00000034183 (Crnde-001) 92326038-92356120 lincRNA
ENSMUST00000178064 (Crnde-002) 92326038-92346870 lincRNA
ENSMUST00000179029 (Crnde-007) 92326250-92355891 lincRNA
ENSMUST00000179222 (Crnde-004) 92346932-92355869 lincRNA
ENSMUST00000179400 (Crnde-005) 92344910-92346870 lincRNA
ENSMUST00000179421 (Crnde-003) 92326038-92355831 lincRNA
ENSMUST00000180102 (Crnde-006) 92336211-92355764 lincRNA
ENSMUSG00000031737 (Irx5)
Iroquois related homeobox 5 (Drosophila) 		ENSMUST00000034184 (Irx5-001) 92357796-92361456 protein_coding
ENSMUSG00000031738 (Irx6)
Iroquois related homeobox 6 (Drosophila) 		ENSMUST00000034185 (Irx6-001) 92674288-92680956 protein_coding
ENSMUST00000167261 (Irx6-002) 92674826-92680956 protein_coding
ENSMUSG00000031740 (Mmp2)
matrix metallopeptidase 2 		ENSMUST00000034187 (Mmp2-201) 92827328-92853417 protein_coding
ENSMUSG00000033192 (Lpcat2)
lysophosphatidylcholine acyltransferase 2 		ENSMUST00000046290 (Lpcat2-001) 92855350-92919279 protein_coding
ENSMUST00000130471 (Lpcat2-002) 92855480-92870058 processed_transcript
ENSMUST00000151106 (Lpcat2-003) 92905918-92918068 processed_transcript
ENSMUSG00000078967 (Gm3272)
predicted pseudogene 3272 		ENSMUST00000181181 (Gm3272-001) 92715747-92716975 processed_pseudogene
ENSMUSG00000095651 (Gm21817)
predicted gene, 21817 		ENSMUST00000178584 (Gm21817-001) 92336668-92339250 lincRNA
ENSMUSG00000100612 (RP24-69M8.4)
predicted gene 29177 		ENSMUST00000187016 (RP24-69M8.4-001) 92365189-92365621 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000987_0001ENSG00000087245ENST00000219070ENST00000437642ENST00000543485ENST00000564864ENST00000566564ENST00000568715ENST00000570283ENST00000570308ENSG00000159387ENST00000290552ENST00000558315ENSG00000176842ENST00000320990ENST00000394636ENST00000558597ENST00000560154ENST00000620085ENSG00000239555ENST00000470547ENSG00000245694ENST00000501177ENST00000502066ENST00000557792ENST00000558031ENST00000558952ENST00000559432ENST00000559598ENST00000560029ENST00000560208ENST00000560912ENSG00000259283ENST00000558730ENSG00000259711ENST00000560487ENSG00000259725ENST00000558156ENST00000559802ENSG00000260135ENST00000565307ENST00000569037ENST00000620495ENSG00000263207ENST00000573934ENSG00000274508ENST00000611626CIL_000987_0002ENSMUSG00000031736ENSMUST00000034183ENSMUST00000178064ENSMUST00000179029ENSMUST00000179222ENSMUST00000179400ENSMUST00000179421ENSMUST00000180102ENSMUSG00000031737ENSMUST00000034184ENSMUSG00000031738ENSMUST00000034185ENSMUST00000167261ENSMUSG00000031740ENSMUST00000034187ENSMUSG00000033192ENSMUST00000046290ENSMUST00000130471ENSMUST00000151106ENSMUSG00000078967ENSMUST00000181181ENSMUSG00000095651ENSMUST00000178584ENSMUSG00000100612ENSMUST00000187016
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000987_0001ENSG00000087245ENST00000219070ENST00000437642ENST00000543485ENST00000564864ENST00000566564ENST00000570283ENST00000570308ENSG00000159387ENST00000290552ENST00000558315ENSG00000176842ENST00000320990ENST00000394636ENST00000558597ENST00000560154ENST00000620085ENSG00000239555ENST00000470547ENSG00000245694ENST00000501177ENST00000502066ENST00000558031ENST00000558952ENST00000559432ENST00000559598ENST00000560029ENST00000560208ENST00000560912ENSG00000259283ENST00000558730ENSG00000259711ENST00000560487ENSG00000259725ENST00000558156ENST00000559802ENSG00000260135ENST00000565307ENST00000569037ENST00000620495ENSG00000263207ENST00000573934ENSG00000274508ENST00000611626CIL_000987_0002ENSMUSG00000031736ENSMUST00000034183ENSMUST00000178064ENSMUST00000179029ENSMUST00000179222ENSMUST00000179400ENSMUST00000179421ENSMUST00000180102ENSMUSG00000031737ENSMUST00000034184ENSMUSG00000031738ENSMUST00000034185ENSMUST00000167261ENSMUSG00000031740ENSMUST00000034187ENSMUSG00000033192ENSMUST00000046290ENSMUST00000130471ENSMUSG00000078967ENSMUST00000181181ENSMUSG00000095651ENSMUST00000178584ENSMUSG00000100612ENSMUST00000187016
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000087245 ENST00000219070 160.351±0.00 4.443±0.00 1.036±0.00 0.197±0.09 20.144±7.78 17.419±12.95 5.071±2.95 1.955±1.59 6.240±5.31 15.342±10.23 3.816±2.06 27.732±21.21 36.056±15.06 13.388±8.95
ENST00000437642 N/A N/A 0.848±0.00 0.150±0.00 N/A N/A 1.994±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000543485 194.921±0.00 9.945±0.00 0.930±0.00 0.927±0.00 27.068±6.17 7.315±0.00 2.005±0.00 4.355±3.42 9.909±0.00 5.236±0.00 1.374±0.00 23.294±11.82 89.904±0.00 N/A
ENST00000564864 N/A N/A 3.199±0.00 N/A 25.877±0.00 N/A N/A 1.581±0.00 20.523±0.00 12.810±0.00 N/A 12.732±0.00 N/A N/A
ENST00000566564 N/A N/A N/A 1.338±0.00 N/A N/A N/A N/A 4.069±0.00 N/A N/A N/A N/A N/A
ENST00000568715 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570283 N/A N/A N/A N/A N/A N/A N/A N/A 18.349±0.00 N/A N/A 38.998±0.00 114.880±0.00 23.417±0.00
ENST00000570308 N/A N/A N/A N/A 11.842±0.00 N/A N/A N/A N/A N/A 2.076±0.00 N/A N/A N/A
ENSG00000159387 ENST00000290552 4.461±0.00 0.081±0.00 0.183±0.00 0.013±0.00 8.555±8.29 0.413±0.38 1.912±1.87 0.966±0.00 0.025±0.00 0.269±0.26 1.161±0.00 0.080±0.05 0.070±0.02 0.052±0.00
ENST00000558315 N/A N/A 0.233±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.033±0.00 N/A N/A
ENSG00000176842 ENST00000320990 N/A 0.122±0.00 N/A N/A 0.743±0.00 N/A N/A N/A 0.261±0.00 N/A N/A 0.173±0.00 N/A 0.263±0.00
ENST00000394636 0.441±0.00 0.186±0.00 0.612±0.00 0.053±0.00 0.448±0.01 N/A 1.679±0.13 1.499±0.00 N/A 0.779±0.00 0.808±0.46 0.201±0.00 N/A N/A
ENST00000558597 N/A N/A N/A N/A 1.273±0.00 N/A 1.091±0.00 0.836±0.00 N/A 0.744±0.00 1.170±0.00 0.836±0.91 0.218±0.17 2.687±0.00
ENST00000560154 N/A N/A N/A N/A 1.996±0.00 N/A 3.642±0.00 1.503±0.86 N/A N/A N/A 0.207±0.00 N/A N/A
ENST00000620085 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.711±0.00 N/A 0.270±0.00 N/A N/A
ENSG00000239555 ENST00000470547 N/A N/A N/A N/A N/A N/A N/A 0.064±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000245694 ENST00000501177 1.218±0.00 N/A N/A 0.117±0.01 1.113±0.00 N/A 2.729±0.00 N/A 0.142±0.07 N/A 0.899±0.00 1.197±0.00 0.670±0.44 N/A
ENST00000502066 3.141±0.00 0.955±0.00 N/A N/A 5.455±0.00 N/A 2.494±1.56 2.353±0.00 0.041±0.00 4.633±0.00 N/A 3.975±1.99 0.592±0.41 36.746±2.59
ENST00000557792 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558031 N/A 0.811±0.00 0.295±0.00 N/A N/A N/A N/A 1.036±0.00 N/A N/A N/A 3.940±0.00 0.250±0.00 N/A
ENST00000558952 N/A 0.375±0.00 N/A 0.097±0.00 N/A N/A 1.175±0.00 N/A 0.494±0.00 N/A N/A N/A 0.516±0.28 N/A
ENST00000559432 N/A N/A N/A N/A 4.018±0.00 0.051±0.00 3.986±0.00 1.120±0.00 N/A 2.233±0.00 N/A N/A N/A 42.351±0.00
ENST00000559598 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.806±0.00 N/A N/A 0.656±0.00 41.889±0.00
ENST00000560029 N/A N/A N/A 0.167±0.06 N/A N/A N/A 0.436±0.00 N/A N/A 1.935±0.00 N/A N/A N/A
ENST00000560208 N/A N/A N/A N/A N/A N/A 0.675±0.00 N/A 0.112±0.00 N/A N/A N/A N/A N/A
ENST00000560912 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.459±0.00 N/A
ENSG00000259283 ENST00000558730 N/A N/A N/A N/A N/A N/A N/A 0.054±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000259711 ENST00000560487 N/A N/A N/A N/A 0.279±0.00 N/A 0.097±0.00 0.167±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000259725 ENST00000558156 N/A N/A N/A N/A 0.748±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559802 0.132±0.00 N/A N/A N/A 0.083±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000260135 ENST00000565307 N/A N/A N/A N/A 0.214±0.00 N/A 0.053±0.00 N/A N/A N/A N/A 0.063±0.00 0.097±0.00 N/A
ENST00000569037 N/A N/A N/A N/A 0.058±0.00 N/A 0.026±0.00 N/A N/A 0.230±0.00 N/A 0.087±0.00 N/A N/A
ENST00000620495 0.138±0.00 0.058±0.00 N/A 0.065±0.00 0.278±0.00 0.055±0.00 0.025±0.00 0.029±0.00 N/A 0.206±0.00 N/A 0.083±0.00 0.077±0.00 N/A
ENSG00000263207 ENST00000573934 N/A N/A N/A N/A 0.112±0.00 0.232±0.00 0.033±0.00 0.035±0.00 N/A N/A N/A N/A N/A 0.065±0.00
ENSG00000274508 ENST00000611626 N/A 0.267±0.00 N/A N/A N/A N/A 0.098±0.07 N/A N/A N/A N/A N/A 0.114±0.01 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031736 ENSMUST00000034183 0.079±0.03 N/A N/A 1.974±1.35 1.095±0.52 0.094±0.02 0.139±0.00 0.262±0.10 N/A 2.341±0.65 0.221±0.07 1.054±0.67 0.314±0.00 10.715±1.56
ENSMUST00000178064 0.145±0.08 N/A N/A 0.394±0.00 N/A 0.250±0.00 0.285±0.02 N/A 0.419±0.19 3.075±0.00 0.552±0.16 2.571±0.40 0.365±0.22 7.550±0.29
ENSMUST00000179029 N/A 1.276±0.00 N/A 0.828±0.00 N/A N/A 0.901±0.16 N/A N/A N/A 0.462±0.00 1.413±0.00 N/A N/A
ENSMUST00000179222 0.251±0.09 2.032±1.12 N/A N/A 1.438±0.51 0.199±0.07 1.138±0.40 0.579±0.00 1.886±0.12 3.591±0.00 0.540±0.00 2.860±1.31 0.761±0.30 N/A
ENSMUST00000179400 N/A N/A N/A N/A N/A N/A N/A N/A 0.147±0.00 N/A 0.113±0.00 N/A N/A N/A
ENSMUST00000179421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.117±0.00 N/A
ENSMUST00000180102 0.158±0.09 N/A N/A 0.118±0.00 N/A N/A 0.282±0.00 N/A N/A N/A 0.375±0.00 N/A 0.154±0.09 N/A
ENSMUSG00000031737 ENSMUST00000034184 0.069±0.03 2.745±0.75 0.098±0.02 6.357±4.63 5.493±2.43 0.021±0.01 2.367±0.60 2.027±0.44 0.035±0.02 15.318±2.20 0.221±0.20 4.019±0.91 0.192±0.14 4.143±1.58
ENSMUSG00000031738 ENSMUST00000034185 N/A N/A N/A 0.575±0.36 0.031±0.02 0.041±0.01 N/A N/A N/A N/A N/A N/A 0.010±0.00 0.046±0.00
ENSMUST00000167261 N/A N/A N/A 0.194±0.04 N/A 0.058±0.03 0.013±0.00 N/A 0.014±0.01 0.017±0.01 N/A N/A 0.002±0.00 0.067±0.01
ENSMUSG00000031740 ENSMUST00000034187 135.853±68.65 11.109±0.75 143.946±12.57 6.292±3.64 189.682±46.05 59.395±7.64 31.927±2.44 8.291±0.98 3.404±1.71 57.402±6.83 9.793±1.72 86.906±23.63 8.473±5.18 1.898±0.71
ENSMUSG00000033192 ENSMUST00000046290 2.393±2.03 2.652±1.02 1.450±0.44 1.034±0.40 2.339±0.91 4.076±2.24 0.354±0.10 0.617±0.13 0.953±0.66 2.477±0.68 0.108±0.05 5.513±2.23 0.532±0.18 0.111±0.04
ENSMUST00000130471 N/A N/A N/A N/A N/A N/A N/A 0.430±0.00 N/A N/A 0.117±0.07 1.676±0.00 N/A N/A
ENSMUST00000151106 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000078967 ENSMUST00000181181 0.326±0.04 0.694±0.15 0.213±0.05 1.534±1.43 0.369±0.17 0.265±0.14 0.430±0.13 0.735±0.15 0.428±0.36 0.432±0.06 0.998±0.23 0.430±0.23 0.273±0.18 0.426±0.03
ENSMUSG00000095651 ENSMUST00000178584 0.077±0.04 0.147±0.09 0.024±0.00 0.228±0.12 0.226±0.14 0.034±0.00 0.088±0.01 0.062±0.02 0.100±0.04 0.604±0.22 0.044±0.00 0.201±0.11 0.048±0.03 0.717±0.28
ENSMUSG00000100612 ENSMUST00000187016 N/A N/A N/A 0.030±0.00 0.137±0.00 N/A N/A 0.128±0.01 N/A 0.460±0.23 N/A 0.237±0.00 N/A 0.118±0.00

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