C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small integral membrane protein 20
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000250317 SMIM20 9606 + 4:25861830-25929874 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000506197 SMIM20-001 25914204-25929812 protein_coding
  ENST00000514384 SMIM20-002 25914309-25929813 protein_coding
  ENST00000515764 SMIM20-003 25861830-25929545 processed_transcript
  ENST00000522137 SMIM20-004 25928215-25929425 processed_transcript
  ENST00000614775 SMIM20-201 25913906-25929874 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000506197ENST00000522137ENST00000614775
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000506197 10.050±0.00 10.470±0.00 4.757±0.00 9.679±1.35 12.236±4.52 12.779±6.11 13.693±7.14 15.304±8.72 14.435±0.58 11.411±1.65 14.284±0.77 16.769±5.61 10.047±0.35 16.843±3.10
ENST00000522137 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.005±0.00
ENST00000614775 N/A N/A 1.706±0.00 N/A N/A 2.216±0.00 N/A N/A N/A N/A N/A 2.031±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000342 CIL_000342_0002 CGP 4:25655301-25863760
CIL_00079P CIL_00079P_0001 CGP 4:25747427-25929874
CIL_000343 CIL_000343_0002 CGP 4:25861830-26435131

Gene Ontology
GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000087729 SMIM20 small integral membrane protein 20 protein_coding Danio_rerio
ENSMUSG00000061461 Smim20 small integral membrane protein 20 protein_coding Mus_musculus

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