C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small integral membrane protein 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000506197 SMIM20-001 ENSG00000250317 9606 + 4:25914204-25929812 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000506197
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000506197 10.050±0.00 10.470±0.00 4.757±0.00 9.679±1.35 12.236±4.52 12.779±6.11 13.693±7.14 15.304±8.72 14.435±0.58 11.411±1.65 14.284±0.77 16.769±5.61 10.047±0.35 16.843±3.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000342 CIL_000342_0002 CGP 4:25655301-25863760
CIL_00079P CIL_00079P_0001 CGP 4:25747427-25929874
CIL_000343 CIL_000343_0002 CGP 4:25861830-26435131

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121042 Smim20-001 protein_coding Mus_musculus 0 261
ENSMUST00000137185 Smim20-004 retained_intron Mus_musculus 3e-32 143
ENSMUST00000136866 Smim20-003 nonsense_mediated_decay Mus_musculus 3e-32 143
ENSMUST00000147148 Smim20-002 nonsense_mediated_decay Mus_musculus 3e-32 143
ENSMUST00000154268 Smim20-005 retained_intron Mus_musculus 4e-26 122

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