C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small integral membrane protein 20
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000061461 Smim20 10090 + 5:53267106-53283510 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000121042 Smim20-001 53267106-53283510 protein_coding
  ENSMUST00000136866 Smim20-003 53267106-53278487 nonsense_mediated_decay
  ENSMUST00000137185 Smim20-004 53267120-53268567 retained_intron
  ENSMUST00000147148 Smim20-002 53267178-53278539 nonsense_mediated_decay
  ENSMUST00000154268 Smim20-005 53277118-53278015 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000121042ENSMUST00000136866ENSMUST00000147148
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000121042 1.794±0.45 7.305±1.87 1.894±0.13 2.079±0.45 2.639±0.93 4.376±0.70 3.273±0.18 3.132±0.57 1.239±0.55 2.497±0.43 1.787±0.23 2.384±0.95 0.516±0.29 0.204±0.09
ENSMUST00000136866 N/A 7.374±1.32 N/A N/A N/A 3.494±0.25 N/A 4.495±0.00 2.910±0.59 2.463±0.00 5.790±0.00 2.681±0.00 1.554±0.00 0.634±0.29
ENSMUST00000147148 20.970±4.74 7.982±1.17 22.021±2.50 10.852±1.87 23.688±11.35 10.691±1.91 40.920±11.33 30.087±6.19 12.377±1.79 10.474±2.96 31.147±5.60 14.850±3.16 16.031±3.24 3.563±1.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00079P CIL_00079P_0002 CGP 5:53107084-53283510
CIL_000343 CIL_000343_0003 CGP 5:53267106-53657445

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000087729 SMIM20 small integral membrane protein 20 protein_coding Danio_rerio
ENSG00000250317 SMIM20 small integral membrane protein 20 protein_coding Homo_sapiens

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